Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E18
         (435 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_03_0207 - 15455163-15455389,15455623-15455895,15455991-154560...    68   4e-12
07_03_1309 + 25669394-25669399,25669520-25669584,25670543-256706...    66   9e-12
01_07_0254 + 42318181-42319471,42319581-42319792,42319909-423201...    32   0.23 
01_01_0189 - 1640581-1640832,1640936-1641132,1641243-1641608,164...    28   3.8  
05_01_0431 + 3412178-3412336,3413012-3413109,3413185-3413312,341...    27   5.0  
08_02_1277 + 25823835-25825113,25825201-25825418,25825501-258257...    27   8.7  

>03_03_0207 -
           15455163-15455389,15455623-15455895,15455991-15456099,
           15456186-15456243,15457002-15457066,15457190-15457195
          Length = 245

 Score = 67.7 bits (158), Expect = 4e-12
 Identities = 34/51 (66%), Positives = 40/51 (78%), Gaps = 2/51 (3%)
 Frame = +1

Query: 289 GFPMKQGVLTNSRVRLLMSKVHSCYR--PRRDCERKRKSVRGCIVDANLSV 435
           GFPMKQGVLT+ RVRLL+ +   C+R   RRD ER+RKSVRGCIV  +LSV
Sbjct: 60  GFPMKQGVLTSGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSV 110



 Score = 34.3 bits (75), Expect = 0.044
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 225 DLLCDEWKGYVLRVAGGNDKQWLPYETG 308
           D L +E+KGYV ++ GG DKQ  P + G
Sbjct: 39  DALGEEFKGYVFKIMGGCDKQGFPMKQG 66



 Score = 28.3 bits (60), Expect = 2.9
 Identities = 11/20 (55%), Positives = 15/20 (75%)
 Frame = +2

Query: 158 EVVDEHKLRIFYEKRMGAEV 217
           E+ D+ KLR FY+KR+  EV
Sbjct: 17  EIDDDQKLRAFYDKRISQEV 36


>07_03_1309 +
           25669394-25669399,25669520-25669584,25670543-25670600,
           25670683-25670791,25670872-25671144,25671348-25671589
          Length = 250

 Score = 66.5 bits (155), Expect = 9e-12
 Identities = 34/51 (66%), Positives = 39/51 (76%), Gaps = 2/51 (3%)
 Frame = +1

Query: 289 GFPMKQGVLTNSRVRLLMSKVHSCYR--PRRDCERKRKSVRGCIVDANLSV 435
           GFPMKQGVLT  RVRLL+ +   C+R   RRD ER+RKSVRGCIV  +LSV
Sbjct: 60  GFPMKQGVLTAGRVRLLLHRGTPCFRGYGRRDGERRRKSVRGCIVSQDLSV 110



 Score = 34.3 bits (75), Expect = 0.044
 Identities = 14/28 (50%), Positives = 19/28 (67%)
 Frame = +3

Query: 225 DLLCDEWKGYVLRVAGGNDKQWLPYETG 308
           D L +E+KGYV ++ GG DKQ  P + G
Sbjct: 39  DALGEEFKGYVFKIMGGCDKQGFPMKQG 66



 Score = 26.6 bits (56), Expect = 8.7
 Identities = 10/20 (50%), Positives = 15/20 (75%)
 Frame = +2

Query: 158 EVVDEHKLRIFYEKRMGAEV 217
           E+ D+ KLR F++KR+  EV
Sbjct: 17  EIDDDQKLRAFFDKRISQEV 36


>01_07_0254 +
           42318181-42319471,42319581-42319792,42319909-42320132,
           42320232-42321009
          Length = 834

 Score = 31.9 bits (69), Expect = 0.23
 Identities = 14/29 (48%), Positives = 16/29 (55%)
 Frame = +2

Query: 116 TFHTLATWMS*SYFEVVDEHKLRIFYEKR 202
           T   L  W    Y E+ DE KLRI YEK+
Sbjct: 485 TLEKLCAWEKKLYQEIKDEEKLRILYEKK 513


>01_01_0189 -
           1640581-1640832,1640936-1641132,1641243-1641608,
           1641826-1642224,1642313-1642719,1642814-1642941
          Length = 582

 Score = 27.9 bits (59), Expect = 3.8
 Identities = 13/30 (43%), Positives = 20/30 (66%), Gaps = 1/30 (3%)
 Frame = -3

Query: 250 PFHSSHRRSASNFSAHTLFIE-DTELVLIH 164
           PF SS RRS+S + ++ LF + D ++V  H
Sbjct: 272 PFSSSSRRSSSRWESYALFRKYDEDMVYFH 301


>05_01_0431 +
           3412178-3412336,3413012-3413109,3413185-3413312,
           3413770-3413881,3414309-3414489,3414714-3414896,
           3415133-3415315,3416062-3416131,3416413-3416522,
           3416604-3416908,3417079-3417175,3417622-3417765,
           3418217-3418303,3418387-3418473,3418566-3418706,
           3418805-3418930,3419166-3419264,3419690-3419757,
           3420275-3420341,3420713-3420883,3420959-3421048,
           3421831-3421911,3423397-3423470,3423784-3423855,
           3423925-3424017,3424138-3424204
          Length = 1030

 Score = 27.5 bits (58), Expect = 5.0
 Identities = 10/22 (45%), Positives = 14/22 (63%)
 Frame = +1

Query: 343 SKVHSCYRPRRDCERKRKSVRG 408
           +K+  C+R +RD E  R  VRG
Sbjct: 50  TKIQKCFRGKRDLELARSEVRG 71


>08_02_1277 +
           25823835-25825113,25825201-25825418,25825501-25825724,
           25826468-25827080,25827735-25827775,25830549-25831191,
           25832595-25834012,25834110-25834251,25834415-25834522,
           25835346-25835558,25835643-25835753,25836099-25836293,
           25836555-25836695,25836835-25836909
          Length = 1806

 Score = 26.6 bits (56), Expect = 8.7
 Identities = 14/30 (46%), Positives = 16/30 (53%)
 Frame = +2

Query: 116 TFHTLATWMS*SYFEVVDEHKLRIFYEKRM 205
           T   L TW    Y EV    +LRI YEKR+
Sbjct: 483 TLDRLYTWEKKLYKEVKAGERLRIDYEKRL 512


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,479,332
Number of Sequences: 37544
Number of extensions: 196396
Number of successful extensions: 423
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 413
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 421
length of database: 14,793,348
effective HSP length: 75
effective length of database: 11,977,548
effective search space used: 826450812
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)