Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E18
         (435 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical ...    83   8e-17
AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical...    27   7.8  
AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical...    27   7.8  

>AL132902-1|CAB81996.1|  246|Caenorhabditis elegans Hypothetical
           protein Y71A12B.1 protein.
          Length = 246

 Score = 83.0 bits (196), Expect = 8e-17
 Identities = 37/48 (77%), Positives = 42/48 (87%)
 Frame = +1

Query: 289 GFPMKQGVLTNSRVRLLMSKVHSCYRPRRDCERKRKSVRGCIVDANLS 432
           GFPMKQG+LTN RVRLL+ K  SCYR R++ ERKRKSVRGCIVDAN+S
Sbjct: 60  GFPMKQGILTNGRVRLLLKKGQSCYRERKNGERKRKSVRGCIVDANMS 107



 Score = 45.6 bits (103), Expect = 2e-05
 Identities = 18/28 (64%), Positives = 21/28 (75%)
 Frame = +3

Query: 225 DLLCDEWKGYVLRVAGGNDKQWLPYETG 308
           D L DEWKGYV+R+ GGNDKQ  P + G
Sbjct: 39  DALGDEWKGYVVRIGGGNDKQGFPMKQG 66



 Score = 32.7 bits (71), Expect = 0.12
 Identities = 14/21 (66%), Positives = 17/21 (80%)
 Frame = +2

Query: 155 FEVVDEHKLRIFYEKRMGAEV 217
           FEV +E KLR+F+EKRM  EV
Sbjct: 16  FEVDEEKKLRLFFEKRMSQEV 36


>AL110479-26|CAB54376.1|  385|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28b protein.
          Length = 385

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = -1

Query: 336 ETYTAVSQDSLFHREATACRYRRQHGEHNLSIRRIEDLHQTSAPIRFS*KIRSLCSS 166
           E  +A+++ SL H +  A  Y   HG  + + RR+  LH+T++  +FS  + S  SS
Sbjct: 271 EIMSAINKLSLVHPQHIA--YYDPHGGKD-NERRLTGLHETASIDKFSYGVASRASS 324


>AL110479-25|CAB60321.1|  388|Caenorhabditis elegans Hypothetical
           protein Y105C5B.28a protein.
          Length = 388

 Score = 26.6 bits (56), Expect = 7.8
 Identities = 19/57 (33%), Positives = 32/57 (56%)
 Frame = -1

Query: 336 ETYTAVSQDSLFHREATACRYRRQHGEHNLSIRRIEDLHQTSAPIRFS*KIRSLCSS 166
           E  +A+++ SL H +  A  Y   HG  + + RR+  LH+T++  +FS  + S  SS
Sbjct: 274 EIMSAINKLSLVHPQHIA--YYDPHGGKD-NERRLTGLHETASIDKFSYGVASRASS 327


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 8,723,218
Number of Sequences: 27780
Number of extensions: 163330
Number of successful extensions: 379
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 366
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 379
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 735312162
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)