Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E17
         (509 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein Urb1|Schi...    29   0.31 
SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase Hat1|Schi...    27   2.2  
SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit Cdc21...    26   3.8  
SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor, ...    25   8.7  
SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|ch...    25   8.7  

>SPCC14G10.02 ||SPCC18B5.13|ribosome biogenesis protein
           Urb1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1568

 Score = 29.5 bits (63), Expect = 0.31
 Identities = 14/32 (43%), Positives = 22/32 (68%)
 Frame = +2

Query: 56  IAALY*FCREDPITVITVCKLKHKYDYIDPCT 151
           +A+LY   R+D I  I++C L HK+ ++D CT
Sbjct: 202 LASLY--SRDDEIDGISLCNLVHKF-FVDACT 230


>SPAC139.06 |hat1|SPAC23C4.01|histone acetyltransferase
           Hat1|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 378

 Score = 26.6 bits (56), Expect = 2.2
 Identities = 14/35 (40%), Positives = 21/35 (60%)
 Frame = +3

Query: 318 YTRIVYLGIFSVTCFALSAAGRDINSKFAQNNESQ 422
           Y R++ +GIFS   F  S + + INSK A+   +Q
Sbjct: 253 YKRLLSMGIFSEPDFHPSLSRQWINSKIAETKLTQ 287


>SPCC16A11.17 |cdc21|mcm4, SPCC24B10.01|MCM complex subunit
           Cdc21|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 911

 Score = 25.8 bits (54), Expect = 3.8
 Identities = 10/17 (58%), Positives = 12/17 (70%)
 Frame = -1

Query: 53  IETTGTRRCLATKLNPR 3
           IE TG  RC+  +LNPR
Sbjct: 410 IEVTGIFRCVPVRLNPR 426


>SPAC1327.01c ||SPAC1783.09c, SPAC18G6.16c|transcription factor,
           zf-fungal binuclear cluster type |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 977

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 8/22 (36%), Positives = 14/22 (63%)
 Frame = -3

Query: 429 MDLEIHYFEQISNLCHGQQHSM 364
           ++L IH  E   + CHGQ +++
Sbjct: 405 LELRIHLAEVFFHCCHGQSYNL 426


>SPBC20F10.07 |||GRAM domain protein|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 764

 Score = 24.6 bits (51), Expect = 8.7
 Identities = 10/25 (40%), Positives = 16/25 (64%)
 Frame = -3

Query: 471 LHPTHTIRRYMSSVMDLEIHYFEQI 397
           +HPTH +   M S++ L+  Y +QI
Sbjct: 652 MHPTHLLLVVMFSMLVLQWWYMQQI 676


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,007,264
Number of Sequences: 5004
Number of extensions: 38622
Number of successful extensions: 70
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 69
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 69
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 204242806
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)