Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E17
         (509 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

11_06_0495 - 24319531-24320831,24320923-24321109,24322919-243230...    29   2.9  
01_06_1816 + 40086972-40087820,40088324-40088459,40088544-400886...    28   3.8  
02_04_0292 + 21642544-21642726                                         27   6.6  
01_06_1807 - 40021733-40021987                                         27   8.8  

>11_06_0495 -
           24319531-24320831,24320923-24321109,24322919-24323062,
           24324467-24324469
          Length = 544

 Score = 28.7 bits (61), Expect = 2.9
 Identities = 12/28 (42%), Positives = 20/28 (71%)
 Frame = -3

Query: 471 LHPTHTIRRYMSSVMDLEIHYFEQISNL 388
           + PT T+RR M++V  L +H+F+Q S +
Sbjct: 331 VRPTPTVRRIMTNV--LSLHFFQQASGI 356


>01_06_1816 +
           40086972-40087820,40088324-40088459,40088544-40088640,
           40088742-40088842,40089149-40089312,40089407-40089595,
           40089904-40090025,40090200-40090242
          Length = 566

 Score = 28.3 bits (60), Expect = 3.8
 Identities = 19/55 (34%), Positives = 28/55 (50%)
 Frame = +2

Query: 11  SISSLNIAVCRLFRFIAALY*FCREDPITVITVCKLKHKYDYIDPCTRKSFLYRR 175
           ++  + I  CR     AA+     +  IT+I +CKL  K D I P + KS  +RR
Sbjct: 337 ALDPILIFTCRFGVVGAAIAHVISQYLITLIMLCKLVRKVDVI-PSSLKSLKFRR 390


>02_04_0292 + 21642544-21642726
          Length = 60

 Score = 27.5 bits (58), Expect = 6.6
 Identities = 11/22 (50%), Positives = 15/22 (68%)
 Frame = -3

Query: 465 PTHTIRRYMSSVMDLEIHYFEQ 400
           P  T+RRY S++ DL  H FE+
Sbjct: 18  PPDTVRRYESAISDLAGHGFEE 39


>01_06_1807 - 40021733-40021987
          Length = 84

 Score = 27.1 bits (57), Expect = 8.8
 Identities = 12/35 (34%), Positives = 20/35 (57%)
 Frame = -3

Query: 456 TIRRYMSSVMDLEIHYFEQISNLCHGQQHSMQSTL 352
           T+RRY S++ DL  H FE+   L    +  +Q+ +
Sbjct: 45  TVRRYESAISDLAGHGFEEEGYLVINYKSDLQTVM 79


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,956,931
Number of Sequences: 37544
Number of extensions: 211182
Number of successful extensions: 338
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 334
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 338
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1095026320
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)