Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E16
(443 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosi... 75 3e-14
Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical p... 28 3.5
Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical pr... 28 3.5
Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical pr... 27 6.1
U61948-4|AAB03146.1| 316|Caenorhabditis elegans Hypothetical pr... 27 8.1
U28941-3|AAM98025.1| 799|Caenorhabditis elegans Temporarily ass... 27 8.1
U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily ass... 27 8.1
U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily ass... 27 8.1
AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical ... 27 8.1
AC024791-33|AAF60669.1| 175|Caenorhabditis elegans Human/fissio... 27 8.1
>AF026213-7|AAB71308.2| 151|Caenorhabditis elegans Tetra thymosin
(four thymosin repeatprotein) protein 1 protein.
Length = 151
Score = 74.5 bits (175), Expect = 3e-14
Identities = 44/113 (38%), Positives = 60/113 (53%), Gaps = 1/113 (0%)
Frame = +3
Query: 105 SLKDLPKVANDLKSQL-EGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDA 281
++ +LPK+ +L + EG L+ V+T EK VLP+ EDVA EK IE FD+
Sbjct: 3 AVTELPKMNQELAGAVREGLE---LKKVETTEKNVLPTKEDVAEEKQHVERIHEIEHFDS 59
Query: 282 TSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDKTQMTHTTTEEKNSLP 440
T L T +EK LP D + EK H L + + +F + T T EKN LP
Sbjct: 60 TKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLP 112
Score = 66.5 bits (155), Expect = 8e-12
Identities = 38/91 (41%), Positives = 50/91 (54%)
Frame = +3
Query: 147 QLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTETQEKNPLP 326
++E F+++ L EKIVLPSA+D+ EK L D I F + +LK TET EKN LP
Sbjct: 53 EIEHFDSTKLHSTPVKEKIVLPSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLP 112
Query: 327 DKDVVAAEKAHQNLLEGVEHFDKTQMTHTTT 419
VA EK L+ FDK+ + H T
Sbjct: 113 SPTDVAREKT----LQMAASFDKSALHHVET 139
Score = 38.3 bits (85), Expect = 0.002
Identities = 25/70 (35%), Positives = 36/70 (51%), Gaps = 2/70 (2%)
Frame = +3
Query: 102 PSLKDLPKVAN--DLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKF 275
PS D+ + +L ++ F + L+ +T EK VLPS DVA EKT + F
Sbjct: 74 PSADDIKQEKQHLELTDKINNFPSENLKKTETIEKNVLPSPTDVAREKTLQM----AASF 129
Query: 276 DATSLKHTET 305
D ++L H ET
Sbjct: 130 DKSALHHVET 139
>Z49908-11|CAA90104.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 27.9 bits (59), Expect = 3.5
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +1
Query: 160 STRAACETSTQMRRSSYRRXXXXXXXXXXXXYSTVLRNSMPPV*NIQKPRRRTLCLTKM- 336
ST + ST R SS YSTV ++ +Q P+R +C T +
Sbjct: 56 STTSPITPSTPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTTLQSPKREFVCSTPIK 115
Query: 337 --LSQRKRHIR 363
S K H++
Sbjct: 116 NGTSDAKSHLK 126
>Z49070-5|CAA88872.2| 355|Caenorhabditis elegans Hypothetical
protein T09F3.1 protein.
Length = 355
Score = 27.9 bits (59), Expect = 3.5
Identities = 19/71 (26%), Positives = 28/71 (39%), Gaps = 3/71 (4%)
Frame = +1
Query: 160 STRAACETSTQMRRSSYRRXXXXXXXXXXXXYSTVLRNSMPPV*NIQKPRRRTLCLTKM- 336
ST + ST R SS YSTV ++ +Q P+R +C T +
Sbjct: 56 STTSPITPSTPPRASSSSSMFAASSPSAAATYSTVTTAALVVPTTLQSPKREFVCSTPIK 115
Query: 337 --LSQRKRHIR 363
S K H++
Sbjct: 116 NGTSDAKSHLK 126
>Z75537-3|CAA99836.1| 1096|Caenorhabditis elegans Hypothetical
protein F18E2.3 protein.
Length = 1096
Score = 27.1 bits (57), Expect = 6.1
Identities = 11/37 (29%), Positives = 23/37 (62%)
Frame = +3
Query: 279 ATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHF 389
A ++ T T+E + D+++VAA K+ + + E V+ +
Sbjct: 93 APMVRRTTTEESAEVDDRELVAAVKSGKKITEAVDRW 129
>U61948-4|AAB03146.1| 316|Caenorhabditis elegans Hypothetical
protein C46A5.6 protein.
Length = 316
Score = 26.6 bits (56), Expect = 8.1
Identities = 25/115 (21%), Positives = 46/115 (40%), Gaps = 2/115 (1%)
Frame = +3
Query: 90 VGDAPSLKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDVATEKTQKSLFDGIE 269
+ ++P +D P + FNT+ D+D NE+ ++ D K + D IE
Sbjct: 158 ITESPKNRDFPLFFSSFDDTTVLFNTTIAGDIDVNER--NQASGDWIFRKDKSPTNDPIE 215
Query: 270 KFDATSLK-HTETQEKNPLPDKDVVAAEKAHQNLLEGVE-HFDKTQMTHTTTEEK 428
T K +E + + K+ V + K + G +K + T+ +K
Sbjct: 216 NDQETDEKTKSELGDGGEIVFKEPVQSTKKTRGRKRGTSVRIEKLSTSRRTSAKK 270
>U28941-3|AAM98025.1| 799|Caenorhabditis elegans Temporarily
assigned gene nameprotein 149, isoform d protein.
Length = 799
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 177 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTET-QEKNPL----PDKDVV 341
R++ T + V + E VA ++ Q+ + + + SL ET K L P +
Sbjct: 635 RNLATADLFVQDAQEYVAHQQNQQDKGSFVMEEEMLSLHEPETGSNKKKLTPKNPSFEAT 694
Query: 342 AAEKAHQNLLEGVEHFDKTQMTHTTTEEKNSLPP 443
+ + ++ E +EH + MT+ + +PP
Sbjct: 695 SRQVRTNDVFERIEHDEHDDMTYAPEIQSVEIPP 728
>U28941-2|AAC71103.1| 1091|Caenorhabditis elegans Temporarily
assigned gene nameprotein 149, isoform a protein.
Length = 1091
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 177 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTET-QEKNPL----PDKDVV 341
R++ T + V + E VA ++ Q+ + + + SL ET K L P +
Sbjct: 635 RNLATADLFVQDAQEYVAHQQNQQDKGSFVMEEEMLSLHEPETGSNKKKLTPKNPSFEAT 694
Query: 342 AAEKAHQNLLEGVEHFDKTQMTHTTTEEKNSLPP 443
+ + ++ E +EH + MT+ + +PP
Sbjct: 695 SRQVRTNDVFERIEHDEHDDMTYAPEIQSVEIPP 728
>U28941-1|AAC71102.1| 1107|Caenorhabditis elegans Temporarily
assigned gene nameprotein 149, isoform b protein.
Length = 1107
Score = 26.6 bits (56), Expect = 8.1
Identities = 21/94 (22%), Positives = 41/94 (43%), Gaps = 5/94 (5%)
Frame = +3
Query: 177 RDVDTNEKIVLPSAEDVATEKTQKSLFDGIEKFDATSLKHTET-QEKNPL----PDKDVV 341
R++ T + V + E VA ++ Q+ + + + SL ET K L P +
Sbjct: 635 RNLATADLFVQDAQEYVAHQQNQQDKGSFVMEEEMLSLHEPETGSNKKKLTPKNPSFEAT 694
Query: 342 AAEKAHQNLLEGVEHFDKTQMTHTTTEEKNSLPP 443
+ + ++ E +EH + MT+ + +PP
Sbjct: 695 SRQVRTNDVFERIEHDEHDDMTYAPEIQSVEIPP 728
>AF040645-7|AAB94977.2| 304|Caenorhabditis elegans Hypothetical
protein F52C6.11 protein.
Length = 304
Score = 26.6 bits (56), Expect = 8.1
Identities = 17/41 (41%), Positives = 22/41 (53%)
Frame = +3
Query: 105 SLKDLPKVANDLKSQLEGFNTSCLRDVDTNEKIVLPSAEDV 227
S K+ KVA K QLE SCL ++T E+I A D+
Sbjct: 247 STKEKLKVAK--KYQLENLKASCLAKINTLEEIKAALAGDL 285
>AC024791-33|AAF60669.1| 175|Caenorhabditis elegans Human/fission
yeast mis (minichromosomestability) homolog protein 12
protein.
Length = 175
Score = 26.6 bits (56), Expect = 8.1
Identities = 13/55 (23%), Positives = 29/55 (52%)
Frame = +3
Query: 231 TEKTQKSLFDGIEKFDATSLKHTETQEKNPLPDKDVVAAEKAHQNLLEGVEHFDK 395
++KT + F +++F T++ P K ++A+ K H++L + + FD+
Sbjct: 65 SDKTNEKAFKMMKRFCVTNIFRIPASVTLPECKKMLIASAKEHKSLKQVEKEFDE 119
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 9,850,372
Number of Sequences: 27780
Number of extensions: 210377
Number of successful extensions: 632
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 607
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 631
length of database: 12,740,198
effective HSP length: 75
effective length of database: 10,656,698
effective search space used: 767282256
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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