Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E16
         (443 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein pr...    23   1.5  
AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor pr...    23   2.0  
AF388659-1|AAK71995.1|  782|Apis mellifera 1D-myo-inositol-trisp...    23   2.0  
DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.              22   3.5  
DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholi...    21   8.0  

>AF388659-4|AAK71996.1| 1308|Apis mellifera NFRKB-like protein
           protein.
          Length = 1308

 Score = 23.0 bits (47), Expect = 1.5
 Identities = 9/21 (42%), Positives = 12/21 (57%)
 Frame = +1

Query: 136 ISKVNWRDSTRAACETSTQMR 198
           +SK+ WR    A  E  TQ+R
Sbjct: 32  MSKIQWRKPKPAMVEEKTQLR 52


>AY937243-1|AAX33677.1| 1370|Apis mellifera Toll-like receptor
           protein.
          Length = 1370

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/22 (45%), Positives = 13/22 (59%)
 Frame = +3

Query: 264 IEKFDATSLKHTETQEKNPLPD 329
           IE  + TSL  T+  E  PLP+
Sbjct: 653 IETMELTSLLLTKVAEDRPLPE 674


>AF388659-1|AAK71995.1|  782|Apis mellifera
           1D-myo-inositol-trisphosphate 3-kinaseisoform A protein.
          Length = 782

 Score = 22.6 bits (46), Expect = 2.0
 Identities = 10/21 (47%), Positives = 12/21 (57%)
 Frame = -1

Query: 356 CLFRCDNIFVRQRVLLLGFCM 294
           C+ R  N   R RVLL G C+
Sbjct: 32  CVSRISNRISRNRVLLRGQCI 52


>DQ435334-1|ABD92649.1|  135|Apis mellifera OBP17 protein.
          Length = 135

 Score = 21.8 bits (44), Expect = 3.5
 Identities = 7/25 (28%), Positives = 17/25 (68%)
 Frame = +3

Query: 132 NDLKSQLEGFNTSCLRDVDTNEKIV 206
           ++LKS L    + C++++ T ++I+
Sbjct: 20  DELKSGLHTVQSVCMKEIGTAQQII 44


>DQ026039-1|AAY87898.1|  427|Apis mellifera nicotinic acetylcholine
           receptor beta2subunit protein.
          Length = 427

 Score = 20.6 bits (41), Expect = 8.0
 Identities = 6/17 (35%), Positives = 10/17 (58%)
 Frame = -3

Query: 237 FQWQHLQPTVGRSSHLC 187
           + W+H    +G S+ LC
Sbjct: 388 YTWRHTSVLIGWSAFLC 404


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 118,928
Number of Sequences: 438
Number of extensions: 2494
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 53
effective length of database: 123,129
effective search space used: 11574126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 40 (21.2 bits)