Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E15
         (514 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein ...    23   1.4  
AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase ...    22   3.2  
EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.          21   7.5  
AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.      21   7.5  
DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex det...    21   9.9  

>AF159569-1|AAF70859.1| 1124|Apis mellifera period clock protein
           protein.
          Length = 1124

 Score = 23.4 bits (48), Expect = 1.4
 Identities = 15/52 (28%), Positives = 25/52 (48%), Gaps = 2/52 (3%)
 Frame = -3

Query: 470 FQVDTNY--KHGSISTWCGDDYFLGSTHQVSRSFISGCEHTG*FNNVFSTSL 321
           FQV+ ++  K     +W GD + +    +VSR+  +G   T     V S S+
Sbjct: 691 FQVNQSHGIKRSGSHSWEGDSFKVSKHEEVSRTSTAGQFPTNVATTVTSMSI 742


>AY855337-1|AAW47987.1|  510|Apis mellifera tyrosine hydroxylase
           protein.
          Length = 510

 Score = 22.2 bits (45), Expect = 3.2
 Identities = 11/31 (35%), Positives = 18/31 (58%)
 Frame = +3

Query: 264 NGKKIAVFSERDPHAIPWGQAGAEYVVESTG 356
           N KK+      +PH IP  Q  +E++ ++TG
Sbjct: 262 NFKKMQEEKIFEPHRIPQLQEVSEFLKKNTG 292


>EF625896-1|ABR45903.1|  683|Apis mellifera hexamerin protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 85  LIPIFDMIMVRVYFRNEVTQRSLSTSL 5
           L P+++ +M  +YF +EV Q++ + ++
Sbjct: 157 LPPMYE-VMPHLYFNDEVMQKAYNIAM 182


>AY601637-1|AAT11850.1|  683|Apis mellifera hexamerin 70b protein.
          Length = 683

 Score = 21.0 bits (42), Expect = 7.5
 Identities = 8/27 (29%), Positives = 19/27 (70%)
 Frame = -1

Query: 85  LIPIFDMIMVRVYFRNEVTQRSLSTSL 5
           L P+++ +M  +YF +EV Q++ + ++
Sbjct: 157 LPPMYE-VMPHLYFNDEVMQKAYNIAM 182


>DQ325104-1|ABD14118.1|  180|Apis mellifera complementary sex
           determiner protein.
          Length = 180

 Score = 20.6 bits (41), Expect = 9.9
 Identities = 7/19 (36%), Positives = 11/19 (57%)
 Frame = -3

Query: 506 SI*NNFVGRIVGFQVDTNY 450
           S+ NN++  I  +  D NY
Sbjct: 84  SLSNNYISNISNYNNDNNY 102


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 149,223
Number of Sequences: 438
Number of extensions: 3271
Number of successful extensions: 5
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 14232156
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)