Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E14
(583 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit Rpt2|Schi... 232 3e-62
SPCC576.10c |rpt3||19S proteasome regulatory subunit Rpt3|Schizo... 65 8e-12
SPCC1682.16 |rpt4||19S proteasome regulatory subunit Rpt4|Schizo... 42 7e-05
SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit ... 36 0.006
SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyce... 31 0.16
SPAC630.06c |||conserved fungal protein|Schizosaccharomyces pomb... 30 0.28
SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyce... 29 0.37
SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomy... 29 0.65
SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces... 28 0.87
SPAC6B12.05c |||chromatin remodeling complex subunit |Schizosacc... 27 2.0
SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pomb... 26 3.5
SPCC306.04c |set1||histone lysine methyltransferase Set1|Schizos... 26 3.5
SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces po... 26 4.6
SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease XPF... 26 4.6
SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2 |Schiz... 26 4.6
SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor Cwf22|Schizosacch... 25 8.1
SPBC3B8.09 |||U3 snoRNP-associated protein Utp3 |Schizosaccharom... 25 8.1
>SPBC4.07c |rpt2|mts2|19S proteasome regulatory subunit
Rpt2|Schizosaccharomyces pombe|chr 2|||Manual
Length = 448
Score = 232 bits (567), Expect = 3e-62
Identities = 105/150 (70%), Positives = 135/150 (90%), Gaps = 1/150 (0%)
Frame = +1
Query: 136 YEPPIPTRVGKKKRKAK-GPDAALKLPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQE 312
YEPP+PTR G++K+KA+ GPDA+ KLP V P TRCRL+LLK++RI D+LLMEEE+++NQE
Sbjct: 31 YEPPVPTRTGRRKKKAQSGPDASAKLPTVIPTTRCRLRLLKMQRIHDHLLMEEEYVQNQE 90
Query: 313 RLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVGSEHYVSILSFVDKDQ 492
RLKPQ+E+ +EER++VD++RGTPMSVG LEEIIDD+HAIVST+ G E+YVSI+SFVDKD
Sbjct: 91 RLKPQDERTQEERNRVDEIRGTPMSVGTLEEIIDDDHAIVSTA-GPEYYVSIMSFVDKDM 149
Query: 493 LEPGCSVLLNHKVHAVVGVLGDDTDPMVSV 582
LEPGCSVLL+HK ++VG+L DDTDPM++V
Sbjct: 150 LEPGCSVLLHHKAMSIVGLLLDDTDPMINV 179
>SPCC576.10c |rpt3||19S proteasome regulatory subunit
Rpt3|Schizosaccharomyces pombe|chr 3|||Manual
Length = 389
Score = 64.9 bits (151), Expect = 8e-12
Identities = 36/109 (33%), Positives = 62/109 (56%)
Frame = +1
Query: 256 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVS 435
LER + L ++E FI+ E K + ++ + +V ++ P+ +G E ID N AIV
Sbjct: 16 LERQLEMLDLQEGFIK--EDCKSLKRELIRAQEEVKRIQSVPLVIGQFLEAIDQNTAIVG 73
Query: 436 TSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMVSV 582
++ GS + V ILS +D++ L+P SV L +A+V +L + D +S+
Sbjct: 74 STTGSNYVVRILSTLDRELLKPSASVALQRHSNALVDILPPEADSSISM 122
>SPCC1682.16 |rpt4||19S proteasome regulatory subunit
Rpt4|Schizosaccharomyces pombe|chr 3|||Manual
Length = 388
Score = 41.9 bits (94), Expect = 7e-05
Identities = 28/111 (25%), Positives = 50/111 (45%), Gaps = 4/111 (3%)
Frame = +1
Query: 256 LERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDD----LRGTPMSVGNLEEIIDDNH 423
LE+ K YLL E+ + L+ + ++ K +D L+ +G + + +D
Sbjct: 8 LEKYKSYLLQHREWDSKLKDLRFGNRDLVKKYDKTEDDIKSLQSVGQIIGEVLKQLDSER 67
Query: 424 AIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTDPMV 576
IV S G + V + VD+ L G V L+ ++ +L + DP+V
Sbjct: 68 FIVKASSGPRYVVGCRNNVDQSHLVQGVRVSLDMTTLTIMRILPREVDPLV 118
>SPAC3A11.12c |rpt5|pam2, tbp1|19S proteasome regulatory subunit
Rpt5|Schizosaccharomyces pombe|chr 1|||Manual
Length = 438
Score = 35.5 bits (78), Expect = 0.006
Identities = 28/123 (22%), Positives = 52/123 (42%), Gaps = 21/123 (17%)
Frame = +1
Query: 271 DYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIID------------ 414
D +M+ EF R EKI+E + K+ + + P VGN+ EI+D
Sbjct: 49 DIKVMKSEFQRLTHEKSTMLEKIKENQEKISNNKMLPYLVGNVVEILDMQPDEVDVQESA 108
Query: 415 ---------DNHAIVSTSVGSEHYVSILSFVDKDQLEPGCSVLLNHKVHAVVGVLGDDTD 567
A++ TS ++ ++ V+ ++L PG + +N + ++ L + D
Sbjct: 109 NQNSEATRVGKSAVIKTSTRQTIFLPLIGLVEPEELHPGDLIGVNKDSYLIIDKLPSEYD 168
Query: 568 PMV 576
V
Sbjct: 169 SRV 171
>SPAC1F3.06c |spo15||sporulation protein Spo15|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 1957
Score = 30.7 bits (66), Expect = 0.16
Identities = 20/60 (33%), Positives = 32/60 (53%)
Frame = +1
Query: 238 RLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 417
R KLLKLE L+ ++E + + E K + E+ R + LR + + NL E+ID+
Sbjct: 664 RTKLLKLEESNKSLIKKQEDVDSLE--KNIQTLKEDLRKSEEALRFSKLEAKNLREVIDN 721
>SPAC630.06c |||conserved fungal protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 188
Score = 29.9 bits (64), Expect = 0.28
Identities = 14/30 (46%), Positives = 19/30 (63%)
Frame = +2
Query: 299 SVTKRDSNHRRRKSKKRDQRLMI*EEHQCQ 388
S+ K +S HRRR SKKR R+ + E + Q
Sbjct: 133 SIKKEESKHRRRPSKKRRIRMKLLREKEEQ 162
>SPAC1B9.03c ||SPAC6B12.01|RNA-binding protein|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 389
Score = 29.5 bits (63), Expect = 0.37
Identities = 13/21 (61%), Positives = 14/21 (66%)
Frame = +1
Query: 223 PHTRCRLKLLKLERIKDYLLM 285
PHT RLK K +IKDYL M
Sbjct: 55 PHTAIRLKERKANKIKDYLTM 75
>SPBP22H7.05c |||ATPase with bromodomain protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 1201
Score = 28.7 bits (61), Expect = 0.65
Identities = 11/21 (52%), Positives = 16/21 (76%)
Frame = +1
Query: 145 PIPTRVGKKKRKAKGPDAALK 207
PIP+R G++KRK +GP +K
Sbjct: 208 PIPSRRGRRKRKMRGPILPVK 228
>SPBC20F10.03 |||conserved eukaryotic protein|Schizosaccharomyces
pombe|chr 2|||Manual
Length = 446
Score = 28.3 bits (60), Expect = 0.87
Identities = 19/55 (34%), Positives = 30/55 (54%), Gaps = 1/55 (1%)
Frame = +2
Query: 200 HSNYLKLLLTQDVDLNYSSLKG*RIICLWKKN-SSVTKRDSNHRRRKSKKRDQRL 361
+S Y+ L ++D D ++ S I K+ SS +RD + R K KK+DQR+
Sbjct: 379 YSGYVAGLSSRDPDSDFDSDNVDEYIDDHKRGLSSTERRDLDRVRDKQKKQDQRV 433
>SPAC6B12.05c |||chromatin remodeling complex subunit
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 295
Score = 27.1 bits (57), Expect = 2.0
Identities = 11/33 (33%), Positives = 20/33 (60%)
Frame = +1
Query: 286 EEEFIRNQERLKPQEEKIEEERSKVDDLRGTPM 384
EE+ I ++E + EE++EEE + +D P+
Sbjct: 65 EEDIIDDEESAQVDEEELEEEEEEEEDATPEPV 97
>SPAC3H5.09c |||conserved fungal protein|Schizosaccharomyces pombe|chr
1|||Manual
Length = 2685
Score = 26.2 bits (55), Expect = 3.5
Identities = 20/69 (28%), Positives = 34/69 (49%), Gaps = 1/69 (1%)
Frame = +1
Query: 307 QERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDDNHAIVSTSVG-SEHYVSILSFVD 483
Q+R K EE + E+ ++ L+ S + EE+ + + V S+HY +L ++
Sbjct: 1749 QKRRKELEEFMSSEQERIGFLKSQLESNNDSEEVRQEYEELTKRIVTLSDHY-RLLEYLL 1807
Query: 484 KDQLEPGCS 510
KD E CS
Sbjct: 1808 KD--ESSCS 1814
>SPCC306.04c |set1||histone lysine methyltransferase
Set1|Schizosaccharomyces pombe|chr 3|||Manual
Length = 920
Score = 26.2 bits (55), Expect = 3.5
Identities = 12/29 (41%), Positives = 20/29 (68%)
Frame = -1
Query: 433 TL*HDYHQLSLPGYPLTLVFLSDHQPLIS 347
T+ +DY++ SL P T VF+S+ PL++
Sbjct: 78 TINYDYNENSLGPEPPTQVFVSNISPLVT 106
>SPAC27D7.13c |ssm4|SPAC637.01c|p150-Glued|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 670
Score = 25.8 bits (54), Expect = 4.6
Identities = 18/62 (29%), Positives = 31/62 (50%), Gaps = 3/62 (4%)
Frame = +1
Query: 253 KLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLR---GTPMSVGNLEEIIDDNH 423
KL + D MEEEF+ + + + EK SK L+ + + G L+E++ +N
Sbjct: 166 KLSGLDDSSFMEEEFVWQVDNVLQECEKKFTPHSKGSYLKENLKSELRKGRLDELMCENT 225
Query: 424 AI 429
A+
Sbjct: 226 AL 227
>SPCC970.01 |rad16|rad10, rad20, swi9|DNA repair endonuclease
XPF|Schizosaccharomyces pombe|chr 3|||Manual
Length = 892
Score = 25.8 bits (54), Expect = 4.6
Identities = 16/60 (26%), Positives = 26/60 (43%)
Frame = +1
Query: 208 LPQVTPHTRCRLKLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMS 387
L VT + LK + ++ DY E++ + + +K E E E S +G P S
Sbjct: 408 LSTVTYDNKDSLKNMN-SKLVDYFQWREQYRKMSKSIKKPEPSKEREASNTTSRKGVPPS 466
>SPAC23E2.02 |lsd2|swm2, saf140|histone demethylase SWIRM2
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1273
Score = 25.8 bits (54), Expect = 4.6
Identities = 12/39 (30%), Positives = 22/39 (56%)
Frame = +1
Query: 244 KLLKLERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKV 360
K+L+ +R+ M E IRN K Q+E I ++ +++
Sbjct: 1190 KILRYQRLTKEYEMRAEQIRNDYAAKCQDEPIPDDEARL 1228
>SPBC13E7.01 |cwf22|SPBC15D4.16|splicing factor
Cwf22|Schizosaccharomyces pombe|chr 2|||Manual
Length = 834
Score = 25.0 bits (52), Expect = 8.1
Identities = 23/81 (28%), Positives = 41/81 (50%), Gaps = 1/81 (1%)
Frame = +1
Query: 253 KLERIKDYLLMEEEFIRNQERLKPQEEKIE-EERSKVDDLRGTPMSVGNLEEIIDDNHAI 429
K + IK +L EE+ N+E + EE E EE V+D + ++ID +A
Sbjct: 358 KYDAIKHEILGEEDDDENEEDEEDSEETSESEEDESVNDEK---------PQVIDQTNAS 408
Query: 430 VSTSVGSEHYVSILSFVDKDQ 492
+ ++ Y++I+S VD ++
Sbjct: 409 L-VNLRKSIYLTIMSSVDFEE 428
>SPBC3B8.09 |||U3 snoRNP-associated protein Utp3
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 597
Score = 25.0 bits (52), Expect = 8.1
Identities = 13/53 (24%), Positives = 25/53 (47%)
Frame = +1
Query: 259 ERIKDYLLMEEEFIRNQERLKPQEEKIEEERSKVDDLRGTPMSVGNLEEIIDD 417
E+ + L +EE + + ++ EE S+ ++L G N EE+ D+
Sbjct: 59 EQADELELSDEELVALESSSDEEDGNAEENLSENEELSGKKKDAVNEEELYDN 111
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,249
Number of Sequences: 5004
Number of extensions: 43436
Number of successful extensions: 157
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 149
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 155
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 250133048
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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