Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E13
         (503 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyc...    29   0.40 
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    28   0.92 
SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated |Schizosaccharom...    27   2.1  
SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces ...    26   3.7  
SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces ...    26   3.7  
SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2 |Schizosacch...    25   4.9  
SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr 1||...    25   8.5  

>SPAC25G10.07c |cut7||kinesin-like protein Cut7|Schizosaccharomyces
            pombe|chr 1|||Manual
          Length = 1085

 Score = 29.1 bits (62), Expect = 0.40
 Identities = 16/41 (39%), Positives = 26/41 (63%), Gaps = 4/41 (9%)
 Frame = +1

Query: 286  RTIYTSNSERSEHSIYEIPPNLSTRT----SNAALYKKLKR 396
            R  YTS+++ +E  +Y+ P N S+RT    S+ + Y K+KR
Sbjct: 1046 RETYTSSNQTNEPDVYDKPSN-SSRTSLLRSSRSAYSKMKR 1085


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 27.9 bits (59), Expect = 0.92
 Identities = 19/69 (27%), Positives = 33/69 (47%), Gaps = 8/69 (11%)
 Frame = +3

Query: 141 LPDTSPFNEQHN-------RLNRHPLETPLNANSGYMPPRS-KNVNMVANVCPLAKQDNL 296
           LPD++P+  QHN        + +HP   PL+ N   +   +  N+  V  VC  + + N+
Sbjct: 446 LPDSTPYGMQHNVTIHNVSTIGKHP-SFPLSNNGELIGEFTLSNITDVEKVCACSNK-NI 503

Query: 297 HLELGKERT 323
            +    +RT
Sbjct: 504 QISFSSDRT 512


>SPBP8B7.12c |fta3|sma3|Sim4 and Mal2 associated
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 220

 Score = 26.6 bits (56), Expect = 2.1
 Identities = 20/74 (27%), Positives = 34/74 (45%), Gaps = 1/74 (1%)
 Frame = +3

Query: 150 TSPFNE-QHNRLNRHPLETPLNANSGYMPPRSKNVNMVANVCPLAKQDNLHLELGKERTL 326
           +SP NE +H       +E+ +   S  +    +N+  V  + P  +  +  LEL   +  
Sbjct: 102 SSPLNETEHLSEENLKIESSITFTSEEIEKEKENIKSV--LLPSVQSISSSLELYASKES 159

Query: 327 DLRNSTESLDKDLK 368
           D R+S E +  DLK
Sbjct: 160 DYRSSIEGVLADLK 173


>SPCC16C4.07 |scw1||RNA-binding protein Scw1|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 561

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 19/63 (30%), Positives = 24/63 (38%)
 Frame = +3

Query: 108 YLFSRRFRHPFLPDTSPFNEQHNRLNRHPLETPLNANSGYMPPRSKNVNMVANVCPLAKQ 287
           Y FS     P  P  S ++  H    R P  TP N N     P   N   V N+ P   +
Sbjct: 382 YPFSASTISPSTP-FSAYSSSHGIHQRIPASTPTNTNPADQNPPC-NTIYVGNLPPSTSE 439

Query: 288 DNL 296
           + L
Sbjct: 440 EEL 442


>SPBC4B4.03 |rsc1||RSC complex subunit Rsc1 |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 803

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 16/50 (32%), Positives = 25/50 (50%)
 Frame = +1

Query: 298 TSNSERSEHSIYEIPPNLSTRTSNAALYKKLKRLTSEKCPNRQYTGLSQS 447
           +S+SERS HS Y    ++ T   N+ + +   + TS   P R +   S S
Sbjct: 579 SSHSERSSHSSYHNSSHVPTAAFNSPIMRTSTKSTS-PIPARPFYAQSGS 627


>SPAC2G11.02 |urb2||ribosome biogenesis protein Urb2
            |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1318

 Score = 25.4 bits (53), Expect = 4.9
 Identities = 14/40 (35%), Positives = 20/40 (50%)
 Frame = +1

Query: 349  LSTRTSNAALYKKLKRLTSEKCPNRQYTGLSQSDCFFQNY 468
            LST  ++ A+   L  LTS +C    Y+ L +    F NY
Sbjct: 1019 LSTNDADYAILNILNLLTSNECDEFDYSVLMKVVGVFANY 1058


>SPAC24H6.09 |gef1||RhoGEF Gef1|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 753

 Score = 24.6 bits (51), Expect = 8.5
 Identities = 9/22 (40%), Positives = 13/22 (59%)
 Frame = +3

Query: 114 FSRRFRHPFLPDTSPFNEQHNR 179
           F+R  + P  P+T P + QH R
Sbjct: 88  FARALQDPQTPNTPPVSSQHRR 109


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,155,395
Number of Sequences: 5004
Number of extensions: 43988
Number of successful extensions: 157
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 154
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 157
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 200198394
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)