Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E13
(503 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
08_02_1318 - 26111031-26111276,26112139-26112427,26112936-261130... 30 1.2
03_01_0602 - 4428651-4428847,4429070-4429150,4429226-4429604,443... 29 2.1
08_01_0950 - 9428506-9428693,9429223-9429595,9430127-9430572,943... 27 6.5
02_04_0379 - 22491069-22491503 27 6.5
11_01_0301 + 2259242-2259682 27 8.6
09_06_0067 - 20645012-20645095,20645365-20645466,20645583-206458... 27 8.6
07_01_0566 + 4207894-4207974,4208090-4208144,4208671-4208759,420... 27 8.6
04_01_0145 + 1689148-1689261,1689431-1689621,1689699-1689796,169... 27 8.6
01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553 27 8.6
01_01_0287 - 2371323-2371482,2371582-2371988,2372526-2372552,237... 27 8.6
>08_02_1318 -
26111031-26111276,26112139-26112427,26112936-26113036,
26113628-26113878,26114842-26114865,26115793-26116129
Length = 415
Score = 29.9 bits (64), Expect = 1.2
Identities = 18/48 (37%), Positives = 25/48 (52%), Gaps = 6/48 (12%)
Frame = +1
Query: 328 IYEIPPNLSTRTSNAALYKKLKRLT------SEKCPNRQYTGLSQSDC 453
I EI N+S + N+ YK L +EKC R++TGL + DC
Sbjct: 179 IKEIYSNVSRKILNSDSYKAELSLNRDWSKWAEKCVGRRFTGLERMDC 226
>03_01_0602 -
4428651-4428847,4429070-4429150,4429226-4429604,
4430084-4430216,4430298-4430404,4430490-4430761,
4431581-4431755
Length = 447
Score = 29.1 bits (62), Expect = 2.1
Identities = 22/64 (34%), Positives = 33/64 (51%), Gaps = 1/64 (1%)
Frame = -3
Query: 351 EIRWNFVD-RVFAPFRVRGVNCPVLREDTRLPPCLRF*IAAACTLNLHLTVFPKDVCLVD 175
+ +W++ FAP++V G++ L R RF +++ TLN HLT F KD LV
Sbjct: 365 QFKWSWYHVPTFAPYKVEGMHFSSLYTKCRE----RFLVSSQVTLNSHLTEF-KDHDLVK 419
Query: 174 YVVH 163
H
Sbjct: 420 IRKH 423
>08_01_0950 -
9428506-9428693,9429223-9429595,9430127-9430572,
9430654-9430785,9431129-9431236,9431428-9431533
Length = 450
Score = 27.5 bits (58), Expect = 6.5
Identities = 15/45 (33%), Positives = 19/45 (42%)
Frame = +1
Query: 256 WWQTCVLSQNRTIYTSNSERSEHSIYEIPPNLSTRTSNAALYKKL 390
WW CV + RT+ + E I P+ T AL KKL
Sbjct: 33 WWANCVSTLTRTLPNLGTMLDELPIPRPMPSQLQNTVTCALNKKL 77
>02_04_0379 - 22491069-22491503
Length = 144
Score = 27.5 bits (58), Expect = 6.5
Identities = 14/35 (40%), Positives = 18/35 (51%)
Frame = +2
Query: 257 GGKRVSSRKTGQFTPRTRKGANTRSTKFHRISRQG 361
GG SR+TG R R+GA+ T+ R R G
Sbjct: 92 GGAVGRSRRTGSGAKRRRRGADAHLTRERRGKRDG 126
>11_01_0301 + 2259242-2259682
Length = 146
Score = 27.1 bits (57), Expect = 8.6
Identities = 11/23 (47%), Positives = 13/23 (56%)
Frame = +3
Query: 174 NRLNRHPLETPLNANSGYMPPRS 242
+RL RHP P A G PP+S
Sbjct: 44 HRLERHPANGPARAGIGAPPPKS 66
>09_06_0067 -
20645012-20645095,20645365-20645466,20645583-20645828,
20646042-20646236,20646343-20646636,20646952-20647134,
20647534-20647593,20647796-20648002,20648081-20648282,
20648367-20648494,20648759-20648842,20648955-20649134,
20649281-20649372,20649620-20649789,20650226-20650337,
20650451-20650554,20651262-20651371
Length = 850
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/34 (50%), Positives = 23/34 (67%)
Frame = +3
Query: 303 ELGKERTLDLRNSTESLDKDLKCGTLQKVKKTYI 404
++ +ER LDLR + ESLD+D G L KVK+ I
Sbjct: 356 KVSEERELDLRAAKESLDRD-HYG-LTKVKQRII 387
>07_01_0566 +
4207894-4207974,4208090-4208144,4208671-4208759,
4209742-4209794,4209966-4210120,4210201-4210528,
4210618-4210730,4211394-4211538,4211951-4212259,
4212340-4212420,4212989-4213349
Length = 589
Score = 27.1 bits (57), Expect = 8.6
Identities = 12/28 (42%), Positives = 17/28 (60%)
Frame = +3
Query: 93 GFVIGYLFSRRFRHPFLPDTSPFNEQHN 176
GF Y F+RR+R P P+ SP ++N
Sbjct: 405 GFTQQYAFARRYRTP-SPERSPVRSRYN 431
>04_01_0145 +
1689148-1689261,1689431-1689621,1689699-1689796,
1693288-1693443,1694456-1695075,1695204-1695247,
1695361-1695763,1696295-1696466,1696550-1697079
Length = 775
Score = 27.1 bits (57), Expect = 8.6
Identities = 10/17 (58%), Positives = 12/17 (70%)
Frame = +2
Query: 32 IQCASSANSSCSFMPSN 82
+ C S+ANSSC F P N
Sbjct: 652 LDCISAANSSCEFEPIN 668
>01_06_1832 + 40204513-40204722,40205200-40205562,40206038-40206553
Length = 362
Score = 27.1 bits (57), Expect = 8.6
Identities = 17/51 (33%), Positives = 26/51 (50%), Gaps = 1/51 (1%)
Frame = +3
Query: 111 LFSRRFRH-PFLPDTSPFNEQHNRLNRHPLETPLNANSGYMPPRSKNVNMV 260
LF FRH D S ++ ++ R PL+ PLN Y+ S++V M+
Sbjct: 197 LFRDPFRHIAVYADMSTSSDDYSAA-RAPLDNPLNTGLYYVKATSQSVEML 246
>01_01_0287 -
2371323-2371482,2371582-2371988,2372526-2372552,
2372854-2373066
Length = 268
Score = 27.1 bits (57), Expect = 8.6
Identities = 19/72 (26%), Positives = 31/72 (43%)
Frame = +3
Query: 189 HPLETPLNANSGYMPPRSKNVNMVANVCPLAKQDNLHLELGKERTLDLRNSTESLDKDLK 368
HP E ++ S PP N M+A+ P + L+ + L+LR T K L+
Sbjct: 185 HPEEIVIDTLSLMQPPEDDNNEMIADEGPDFDDLDESLQKALNKYLELRGITPMAAKFLQ 244
Query: 369 CGTLQKVKKTYI 404
+ K + Y+
Sbjct: 245 EYMIYKENEEYL 256
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,844,209
Number of Sequences: 37544
Number of extensions: 279843
Number of successful extensions: 847
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 830
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 846
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1071221400
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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