Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E13
(503 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U40413-7|AAK39172.1| 321|Caenorhabditis elegans Hypothetical pr... 28 3.3
Z81449-11|CAD44106.2| 410|Caenorhabditis elegans Hypothetical p... 28 4.4
Z81449-10|CAB03766.4| 419|Caenorhabditis elegans Hypothetical p... 28 4.4
Z48241-6|CAD44100.2| 410|Caenorhabditis elegans Hypothetical pr... 28 4.4
Z48241-5|CAA88286.4| 419|Caenorhabditis elegans Hypothetical pr... 28 4.4
AC024845-7|AAF60849.2| 422|Caenorhabditis elegans Hypothetical ... 27 5.8
Z81541-5|CAE17831.2| 103|Caenorhabditis elegans Hypothetical pr... 27 7.7
Z50863-1|CAA90736.3| 353|Caenorhabditis elegans Hypothetical pr... 27 7.7
AF077534-7|AAK71376.1| 319|Caenorhabditis elegans Prion-like-(q... 27 7.7
>U40413-7|AAK39172.1| 321|Caenorhabditis elegans Hypothetical
protein C18B2.1 protein.
Length = 321
Score = 28.3 bits (60), Expect = 3.3
Identities = 26/82 (31%), Positives = 37/82 (45%)
Frame = +3
Query: 27 NIYSAQALLTAVVASCLVTLMVGFVIGYLFSRRFRHPFLPDTSPFNEQHNRLNRHPLETP 206
NI S +L ++AS V + F I +R P T + RL L
Sbjct: 7 NIMSIARVLI-IIASISVICITLF-ISRPVTRESSIIIAPKTRDMRAEQIRL--FALNAM 62
Query: 207 LNANSGYMPPRSKNVNMVANVC 272
+ ANS +PPRSKN++ N+C
Sbjct: 63 VKANSHTLPPRSKNIS-AKNLC 83
>Z81449-11|CAD44106.2| 410|Caenorhabditis elegans Hypothetical
protein C32A3.3b protein.
Length = 410
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/66 (22%), Positives = 36/66 (54%)
Frame = +1
Query: 214 QIQGTCRRDLKT*TWWQTCVLSQNRTIYTSNSERSEHSIYEIPPNLSTRTSNAALYKKLK 393
Q++ T R+D+ ++++NR + T+ S H+ + P + S R ++ + +LK
Sbjct: 92 QVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHA--DSPVSTSMREADLKMLLELK 149
Query: 394 RLTSEK 411
++S++
Sbjct: 150 EMSSQQ 155
>Z81449-10|CAB03766.4| 419|Caenorhabditis elegans Hypothetical
protein C32A3.3a protein.
Length = 419
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/66 (22%), Positives = 36/66 (54%)
Frame = +1
Query: 214 QIQGTCRRDLKT*TWWQTCVLSQNRTIYTSNSERSEHSIYEIPPNLSTRTSNAALYKKLK 393
Q++ T R+D+ ++++NR + T+ S H+ + P + S R ++ + +LK
Sbjct: 101 QVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHA--DSPVSTSMREADLKMLLELK 158
Query: 394 RLTSEK 411
++S++
Sbjct: 159 EMSSQQ 164
>Z48241-6|CAD44100.2| 410|Caenorhabditis elegans Hypothetical
protein C32A3.3b protein.
Length = 410
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/66 (22%), Positives = 36/66 (54%)
Frame = +1
Query: 214 QIQGTCRRDLKT*TWWQTCVLSQNRTIYTSNSERSEHSIYEIPPNLSTRTSNAALYKKLK 393
Q++ T R+D+ ++++NR + T+ S H+ + P + S R ++ + +LK
Sbjct: 92 QVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHA--DSPVSTSMREADLKMLLELK 149
Query: 394 RLTSEK 411
++S++
Sbjct: 150 EMSSQQ 155
>Z48241-5|CAA88286.4| 419|Caenorhabditis elegans Hypothetical
protein C32A3.3a protein.
Length = 419
Score = 27.9 bits (59), Expect = 4.4
Identities = 15/66 (22%), Positives = 36/66 (54%)
Frame = +1
Query: 214 QIQGTCRRDLKT*TWWQTCVLSQNRTIYTSNSERSEHSIYEIPPNLSTRTSNAALYKKLK 393
Q++ T R+D+ ++++NR + T+ S H+ + P + S R ++ + +LK
Sbjct: 101 QVEKTYRKDIDDLQQMVKSLVNENRNLSTTVSSLPNHA--DSPVSTSMREADLKMLLELK 158
Query: 394 RLTSEK 411
++S++
Sbjct: 159 EMSSQQ 164
>AC024845-7|AAF60849.2| 422|Caenorhabditis elegans Hypothetical
protein Y65B4BL.1 protein.
Length = 422
Score = 27.5 bits (58), Expect = 5.8
Identities = 14/32 (43%), Positives = 20/32 (62%)
Frame = +2
Query: 41 ASSANSSCSFMPSNSYGGICHRILIFASISTP 136
+SS++S+ F +NS GG+ ILI SI P
Sbjct: 128 SSSSSSAGCFSSNNSSGGLFSSILILISIIIP 159
>Z81541-5|CAE17831.2| 103|Caenorhabditis elegans Hypothetical
protein F48F5.6 protein.
Length = 103
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/33 (36%), Positives = 19/33 (57%), Gaps = 1/33 (3%)
Frame = -2
Query: 136 GCRNRRENKYPMTN-PTIRVTRHEATTAVSRAC 41
GC R+E + ++N P + VT+H T +S C
Sbjct: 41 GCCRRKEKRRKLSNIPQVMVTQHRDKTPLSIDC 73
>Z50863-1|CAA90736.3| 353|Caenorhabditis elegans Hypothetical
protein C14H10.1 protein.
Length = 353
Score = 27.1 bits (57), Expect = 7.7
Identities = 15/42 (35%), Positives = 22/42 (52%)
Frame = +3
Query: 48 LLTAVVASCLVTLMVGFVIGYLFSRRFRHPFLPDTSPFNEQH 173
LL++ + L++GF IG L + F H LP+ NE H
Sbjct: 137 LLSSSQGQRRLNLLLGFAIGSLLADVFLH-LLPEAYESNENH 177
>AF077534-7|AAK71376.1| 319|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 48
protein.
Length = 319
Score = 27.1 bits (57), Expect = 7.7
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +2
Query: 416 QTDNIRVYHRVIVSFKTIYKPLCPVCQVF 502
Q D +R + R + IY+ LCP CQ F
Sbjct: 130 QCDGLR-HRRQPIKITLIYEALCPYCQKF 157
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,154,926
Number of Sequences: 27780
Number of extensions: 256268
Number of successful extensions: 799
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 776
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 799
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 967231538
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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