Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E12
         (491 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces pom...    27   1.2  
SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pomb...    27   1.5  
SPCC569.06 |||S. pombe specific multicopy membrane protein famil...    27   2.0  
SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr 1||...    25   4.7  
SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr 3|||Ma...    25   4.7  
SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces pom...    25   6.2  
SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit Mts4|...    25   8.2  

>SPAC3G9.05 |||GTPase activating protein |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 659

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 18/56 (32%), Positives = 27/56 (48%), Gaps = 2/56 (3%)
 Frame = +2

Query: 329 LDKKGFQYSETNQQ--HSVTIPQRSQSFQTHVTEDNPIFEILETFVFEPVMAARDR 490
           L +K  Q+SETNQ+   +++    S + Q  V ED  +       V  P+   RDR
Sbjct: 530 LSEKSKQFSETNQKLLDAISSDSSSSTIQQRVHEDINVIRDTLFDVSSPLELMRDR 585


>SPAC17A5.14 |exo2||exonuclease II Exo2 |Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1328

 Score = 27.1 bits (57), Expect = 1.5
 Identities = 20/63 (31%), Positives = 34/63 (53%), Gaps = 7/63 (11%)
 Frame = +2

Query: 263  RRRNIGGVNEKPFDS---ELNSYSKLDKKGFQYSETN----QQHSVTIPQRSQSFQTHVT 421
            +R NIG +N K FD+   ++  +S+   KG+++S       +++  T PQ      TH T
Sbjct: 987  KRENIG-LNLK-FDARNQKVLGFSRKSTKGWEFSNKTVALVKEYINTFPQLFNILTTHAT 1044

Query: 422  EDN 430
            +DN
Sbjct: 1045 KDN 1047


>SPCC569.06 |||S. pombe specific multicopy membrane protein family
           1|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 478

 Score = 26.6 bits (56), Expect = 2.0
 Identities = 9/19 (47%), Positives = 14/19 (73%)
 Frame = +2

Query: 296 PFDSELNSYSKLDKKGFQY 352
           PF S+L  +S +D+ GF+Y
Sbjct: 60  PFQSDLGLHSPVDRSGFEY 78


>SPAC16E8.08 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 269

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 11/25 (44%), Positives = 16/25 (64%)
 Frame = +3

Query: 327 NWIKKVSNIRKQISNTRLRYLNGVN 401
           N  K++  IRKQ + T LRYL  ++
Sbjct: 86  NTKKELEEIRKQSTETELRYLKSLS 110


>SPCC16A11.06c |gpi10||pig-B|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 506

 Score = 25.4 bits (53), Expect = 4.7
 Identities = 9/24 (37%), Positives = 15/24 (62%)
 Frame = +2

Query: 320 YSKLDKKGFQYSETNQQHSVTIPQ 391
           YS LD +G +Y E  + ++  IP+
Sbjct: 469 YSYLDSRGLKYEEVQRYYNSLIPE 492


>SPCP31B10.06 |mug190||C2 domain protein |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1188

 Score = 25.0 bits (52), Expect = 6.2
 Identities = 12/37 (32%), Positives = 19/37 (51%)
 Frame = +2

Query: 287 NEKPFDSELNSYSKLDKKGFQYSETNQQHSVTIPQRS 397
           NEK FD       +++   F Y++T    S T+P +S
Sbjct: 53  NEKLFDPITQRDVEINDVHFDYAKTYDDPSFTVPNQS 89


>SPBP19A11.03c |mts4|rpn1|19S proteasome regulatory subunit
           Mts4|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 891

 Score = 24.6 bits (51), Expect = 8.2
 Identities = 14/43 (32%), Positives = 20/43 (46%)
 Frame = +2

Query: 332 DKKGFQYSETNQQHSVTIPQRSQSFQTHVTEDNPIFEILETFV 460
           DKKG + SETN ++S    +     +    ED  +   LE  V
Sbjct: 19  DKKGTKTSETNDRNSTNNTKERDELEDLSEEDLQLKNDLELLV 61


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,934,900
Number of Sequences: 5004
Number of extensions: 37945
Number of successful extensions: 96
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)