Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E12
         (491 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

10_06_0014 - 9605186-9607609                                           29   2.0  
04_03_0917 + 20798977-20801369,20801578-20801581                       28   3.5  
12_02_0402 - 18625023-18625808                                         27   6.2  
04_03_0923 + 20843477-20845044,20846081-20846996                       27   8.2  

>10_06_0014 - 9605186-9607609
          Length = 807

 Score = 29.1 bits (62), Expect = 2.0
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = -2

Query: 238 NQSLVIWISCNYMTRILL------FNHNTPLNKRIVSRRN 137
           N S+V W S +Y T  L       +N  T LN+R+VSR+N
Sbjct: 143 NSSMVFWQSFDYPTDSLFADAKIGWNKVTGLNRRLVSRKN 182


>04_03_0917 + 20798977-20801369,20801578-20801581
          Length = 798

 Score = 28.3 bits (60), Expect = 3.5
 Identities = 17/40 (42%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = -2

Query: 238 NQSLVIWISCNYMTRILLF------NHNTPLNKRIVSRRN 137
           N S+V+W S +Y T   L       N  T LN+R+VSR+N
Sbjct: 143 NSSVVLWQSFDYPTNTHLAGAKLGRNKVTGLNRRLVSRKN 182


>12_02_0402 - 18625023-18625808
          Length = 261

 Score = 27.5 bits (58), Expect = 6.2
 Identities = 12/28 (42%), Positives = 19/28 (67%)
 Frame = -2

Query: 436 YRIVFSDVCLKRLTPLRYRNRVLLICFR 353
           +R +F ++ LKRL P+  R R+ L+C R
Sbjct: 12  HRDIFGEI-LKRLPPISGRRRIRLVCRR 38


>04_03_0923 + 20843477-20845044,20846081-20846996
          Length = 827

 Score = 27.1 bits (57), Expect = 8.2
 Identities = 15/40 (37%), Positives = 23/40 (57%), Gaps = 6/40 (15%)
 Frame = -2

Query: 238 NQSLVIWISCNYMTRILL------FNHNTPLNKRIVSRRN 137
           N S++ W S +Y T  L       ++  T LN+R+VSR+N
Sbjct: 146 NSSIIFWQSFDYPTDTLFPSAKIGWDKVTGLNRRLVSRKN 185


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,043,828
Number of Sequences: 37544
Number of extensions: 190442
Number of successful extensions: 445
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 439
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 445
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)