Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E12
         (491 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z49966-6|CAA90243.1|  209|Caenorhabditis elegans Hypothetical pr...    28   3.2  
AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical...    28   3.2  
AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical ...    28   4.2  
Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical pr...    27   5.6  
Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical pr...    27   5.6  
AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical ...    27   5.6  
AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical...    27   7.4  
AF043693-3|AAB97537.1|  207|Caenorhabditis elegans Hypothetical ...    27   7.4  

>Z49966-6|CAA90243.1|  209|Caenorhabditis elegans Hypothetical
           protein F35C11.6 protein.
          Length = 209

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 14/44 (31%), Positives = 24/44 (54%), Gaps = 2/44 (4%)
 Frame = +2

Query: 329 LDKKGFQYSETNQQHSVTIPQRSQSFQTH--VTEDNPIFEILET 454
           LD+K  + SE     +  +PQ  Q F T+  + E NP+F + ++
Sbjct: 113 LDQKIPEVSEIESSSTTAVPQSPQQFVTNIRIEEANPVFFVQQS 156


>AF098992-10|AAC67452.1|  324|Caenorhabditis elegans Hypothetical
           protein F53C3.2 protein.
          Length = 324

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 21/67 (31%), Positives = 33/67 (49%), Gaps = 4/67 (5%)
 Frame = +2

Query: 293 KPFDSELNSYSKLDKKGFQY-SETNQQHSVTIPQRSQSFQTHVTEDNPIFEILE---TFV 460
           KPF + L S S  +   +   SE ++ H   +  +  SF+ +VTE+  +F   E   TF 
Sbjct: 13  KPFQNVLKSMSVGNLLSYSMCSEASKSHVTNLKVKINSFEINVTENVHLFVKSEHGPTFN 72

Query: 461 FEPVMAA 481
           F  V +A
Sbjct: 73  FRTVTSA 79


>AC092690-3|AAK73857.1| 1145|Caenorhabditis elegans Hypothetical
           protein BE0003N10.3 protein.
          Length = 1145

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 9/41 (21%), Positives = 22/41 (53%)
 Frame = +2

Query: 269 RNIGGVNEKPFDSELNSYSKLDKKGFQYSETNQQHSVTIPQ 391
           + +GG N + F +    +  +D +G+Q+ E ++   +  P+
Sbjct: 29  QEVGGANRRKFATSSEVWDTMDGQGYQFKEDDEASQLLDPR 69


>Z77657-7|CAH60768.1|  320|Caenorhabditis elegans Hypothetical
           protein F08H9.12 protein.
          Length = 320

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 17/53 (32%), Positives = 28/53 (52%), Gaps = 2/53 (3%)
 Frame = +3

Query: 315 ILIVNWIKKVSN--IRKQISNTRLRYLNGVNRFKHTSLKTILYLKYLKHLFLN 467
           I ++N +KK++   I K      L YLN +  F   +L+++L    +  LFLN
Sbjct: 138 IFLLNLVKKLNVVLISKDFLLLFLCYLNSIQYFSENNLQSLLSYYMILLLFLN 190


>Z73098-7|CAA97341.1| 1215|Caenorhabditis elegans Hypothetical
           protein T21C9.6 protein.
          Length = 1215

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 22/56 (39%), Positives = 28/56 (50%), Gaps = 4/56 (7%)
 Frame = +3

Query: 315 ILIVNWIKKVSNIRKQISNTRLRYLNGVNRFKHT----SLKTILYLKYLKHLFLNQ 470
           +++  W K VSN R   SN  L+  N +   K T    +LKTI   KY K   LNQ
Sbjct: 149 VILSGWWKCVSNARFFYSNALLKSFNEIYNDKPTALIENLKTI--EKYRKGNVLNQ 202


>AC006722-1|AAK68420.1|  401|Caenorhabditis elegans Hypothetical
           protein Y19D10A.7 protein.
          Length = 401

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 11/46 (23%), Positives = 24/46 (52%)
 Frame = -1

Query: 356 PNIGNLFYPIYYKNLIRSQRVSHLHPQCCADEVASHLSFQSKFSNM 219
           PN+ N++ P  + N+I+ Q  ++LH   C           ++F+++
Sbjct: 170 PNLKNIYNPNAFTNVIKIQIEANLHEDFCITTQEMQTFITTEFASL 215


>AL132862-11|CAB60541.1|  396|Caenorhabditis elegans Hypothetical
           protein Y73F8A.16 protein.
          Length = 396

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 15/37 (40%), Positives = 19/37 (51%)
 Frame = -1

Query: 335 YPIYYKNLIRSQRVSHLHPQCCADEVASHLSFQSKFS 225
           YP YY     SQ+  HL+     + + S  SFQS FS
Sbjct: 340 YPYYYPYFQSSQQFPHLN-YSMNNSIYSDSSFQSSFS 375


>AF043693-3|AAB97537.1|  207|Caenorhabditis elegans Hypothetical
           protein C34B2.5 protein.
          Length = 207

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 14/52 (26%), Positives = 23/52 (44%)
 Frame = +2

Query: 275 IGGVNEKPFDSELNSYSKLDKKGFQYSETNQQHSVTIPQRSQSFQTHVTEDN 430
           IG  NEK  +    +YS + +K     E  +Q   ++P+R       + E N
Sbjct: 86  IGATNEKALERRAFAYSNMSEKYENSIEDYKQLQESLPKRRVELDRKIAEIN 137


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,377,156
Number of Sequences: 27780
Number of extensions: 200566
Number of successful extensions: 454
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 446
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 454
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)