Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E11
         (557 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter...    25   0.39 
AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter...    25   0.39 
AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.              21   6.4  

>AY395072-1|AAQ96728.1|  593|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 593

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 133 LYVPLFTSVSF*NLLTI*NCTKIGFINKFHNNEHNDHLV---PNSCS 2
           +++   T + F   L +     +G  NKF+NN + D L+    NSC+
Sbjct: 279 VWIDAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVNSCT 325



 Score = 21.4 bits (43), Expect = 6.4
 Identities = 15/51 (29%), Positives = 22/51 (43%), Gaps = 2/51 (3%)
 Frame = -1

Query: 467 LAWMAQRLVSSNRPTR*ASLASCKAPMAADWKRRSVLKS*AISR--TSRWK 321
           L W     V  + P    S A  K P+   W+RR++  S  I    + RW+
Sbjct: 158 LCWTQDEDVICSTPIGNLSHALLKDPVKEFWERRTLQISDGIENIGSIRWE 208


>AY395071-1|AAQ96727.1|  646|Apis mellifera GABA neurotransmitter
           transporter-1B protein.
          Length = 646

 Score = 25.4 bits (53), Expect = 0.39
 Identities = 14/47 (29%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
 Frame = -2

Query: 133 LYVPLFTSVSF*NLLTI*NCTKIGFINKFHNNEHNDHLV---PNSCS 2
           +++   T + F   L +     +G  NKF+NN + D L+    NSC+
Sbjct: 332 VWIDAVTQIFFSYALGLGALVALGSYNKFNNNVYKDALIVCTVNSCT 378


>AY686596-1|AAT96374.1| 1946|Apis mellifera Dscam protein.
          Length = 1946

 Score = 21.4 bits (43), Expect = 6.4
 Identities = 9/17 (52%), Positives = 12/17 (70%)
 Frame = +2

Query: 479 LCLKTSSSPGESAESVL 529
           LC+  +S  GES E+VL
Sbjct: 286 LCIVNNSVGGESVETVL 302


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 151,732
Number of Sequences: 438
Number of extensions: 2910
Number of successful extensions: 5
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5
length of database: 146,343
effective HSP length: 54
effective length of database: 122,691
effective search space used: 16072521
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)