Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E10
         (573 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC57A7.04c |pabp||mRNA export shuttling protein |Schizosacchar...    52   5e-08
SPBC660.15 |||mRNA cleavage factor complex subunit |Schizosaccha...    28   0.84 
SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pomb...    27   2.6  
SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|c...    26   3.4  
SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomy...    25   7.9  

>SPAC57A7.04c |pabp||mRNA export shuttling protein
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 653

 Score = 52.4 bits (120), Expect = 5e-08
 Identities = 25/53 (47%), Positives = 36/53 (67%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 416
           LGE LYP+V       +GKITGMLLE+  ++LL LL  + AL ++V EA+ ++
Sbjct: 589 LGELLYPKVFVREEKLSGKITGMLLEMPNSELLELLEDDSALNERVNEAIGVL 641


>SPBC660.15 |||mRNA cleavage factor complex subunit
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 474

 Score = 28.3 bits (60), Expect = 0.84
 Identities = 11/27 (40%), Positives = 13/27 (48%)
 Frame = +3

Query: 150 DARPYSPQAAPGTDAAGYSGERSGGHN 230
           D  P+SP    G+   GY G   GG N
Sbjct: 422 DGVPFSPSMPSGSSRGGYHGRNPGGPN 448


>SPAC1006.04c |mcp3|mug7|sequence orphan|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 952

 Score = 26.6 bits (56), Expect = 2.6
 Identities = 13/29 (44%), Positives = 15/29 (51%)
 Frame = +3

Query: 228  NDHLTHHQAQLGERLYPRVHSLHPTFAGK 314
            N  L  H  +L ERL  R H+L  TF  K
Sbjct: 924  NSELKLHCFELSERLREREHTLQQTFGDK 952


>SPBC56F2.06 |mug147||sequence orphan|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 411

 Score = 26.2 bits (55), Expect = 3.4
 Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
 Frame = +3

Query: 168 PQAAPGTDAAGYSGERSGGHND-HLTHHQAQLGERLYPRVHSLHPTF 305
           PQ   GT+A+GYS +R+   +D   +     L E+L   +   H  +
Sbjct: 253 PQTPMGTEASGYSFDRTPHKSDIQASDRLNALNEKLLQGIQQSHQPY 299


>SPBC1289.16c ||SPBC8E4.06|copper amine oxidase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 794

 Score = 25.0 bits (52), Expect = 7.9
 Identities = 15/63 (23%), Positives = 25/63 (39%)
 Frame = +3

Query: 153 ARPYSPQAAPGTDAAGYSGERSGGHNDHLTHHQAQLGERLYPRVHSLHPTFAGKITGMLL 332
           A+P    A    +  G     +GGH+ H  HH   +   +Y   H  H    G +  M+ 
Sbjct: 718 AQPGQQNANQSEEKQGGQNGSNGGHHHH--HHHHYITGHVYGGYHK-HSGSGGHLVDMMK 774

Query: 333 ELT 341
            ++
Sbjct: 775 NIS 777


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,795,569
Number of Sequences: 5004
Number of extensions: 27623
Number of successful extensions: 78
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 75
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 77
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)