Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E10
         (573 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

04_04_0435 - 25170348-25170593,25170989-25171189,25171580-251717...    57   9e-09
08_02_0163 + 13470178-13470335,13470635-13470656,13470885-134710...    55   5e-08
09_01_0079 - 1159963-1160211,1160303-1160509,1160631-1160801,116...    54   6e-08
03_02_0555 + 9431451-9431688,9432685-9432803,9432886-9433079,943...    54   8e-08
06_03_0614 - 22753092-22753349,22754059-22754277,22754712-227549...    49   2e-06
02_03_0394 + 18546089-18546323,18546784-18546986,18547598-185477...    33   0.16 
04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202     28   4.6  
04_03_0515 + 16698589-16701066                                         27   8.0  

>04_04_0435 -
           25170348-25170593,25170989-25171189,25171580-25171756,
           25172284-25172418,25173131-25173262,25173292-25173369,
           25173452-25174108,25174210-25174328,25175897-25176173
          Length = 673

 Score = 57.2 bits (132), Expect = 9e-09
 Identities = 28/53 (52%), Positives = 36/53 (67%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 416
           LGE LYP V  L    A K+TGMLLE+   ++L LL S +AL+ KV EAMD++
Sbjct: 594 LGESLYPLVELLEQNHAAKVTGMLLEMDQTEVLHLLESPEALKSKVAEAMDVL 646


>08_02_0163 +
           13470178-13470335,13470635-13470656,13470885-13471055,
           13471157-13471363,13471458-13471700
          Length = 266

 Score = 54.8 bits (126), Expect = 5e-08
 Identities = 27/53 (50%), Positives = 36/53 (67%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 416
           LGE LYP V  L    A K+TGMLLE+   ++L L+ S DAL+ KV EAM+++
Sbjct: 188 LGESLYPLVDQLEHDQAAKVTGMLLEMDQTEVLHLIESPDALKAKVAEAMEVL 240


>09_01_0079 -
           1159963-1160211,1160303-1160509,1160631-1160801,
           1161732-1161869,1162184-1162273,1162354-1162431,
           1162510-1163166,1163245-1163363,1164305-1164584
          Length = 662

 Score = 54.4 bits (125), Expect = 6e-08
 Identities = 27/53 (50%), Positives = 36/53 (67%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 416
           LGE LYP V  L    A K+TGMLLE+   ++L LL S +AL+ KV EAM+++
Sbjct: 582 LGENLYPLVDQLEHEQAAKVTGMLLEMDQTEVLHLLESPEALKAKVAEAMEVL 634


>03_02_0555 +
           9431451-9431688,9432685-9432803,9432886-9433079,
           9433174-9433430,9433544-9433650,9433715-9433888,
           9434359-9434490,9434776-9434955,9435062-9435265
          Length = 534

 Score = 54.0 bits (124), Expect = 8e-08
 Identities = 26/53 (49%), Positives = 35/53 (66%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 416
           LG RLYP V   HP  A KITGMLLEL  +++++LL S + L  K+ E + L+
Sbjct: 455 LGNRLYPLVERHHPDLASKITGMLLELGNSEVVMLLYSSNMLSAKIEECVKLL 507


>06_03_0614 -
           22753092-22753349,22754059-22754277,22754712-22754960,
           22755186-22755275,22755379-22755456,22755562-22756337,
           22757042-22757384
          Length = 670

 Score = 49.2 bits (112), Expect = 2e-06
 Identities = 26/53 (49%), Positives = 34/53 (64%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLI 416
           LG+ L+P V  L    A K+TGMLLEL   ++L L+ S D LR KV EAM ++
Sbjct: 587 LGDMLFPLVEQLVNEKAYKVTGMLLELDKTEVLNLVESPDTLRDKVAEAMKVL 639


>02_03_0394 +
           18546089-18546323,18546784-18546986,18547598-18547787,
           18548624-18549015,18549495-18550055
          Length = 526

 Score = 33.1 bits (72), Expect = 0.16
 Identities = 17/37 (45%), Positives = 19/37 (51%)
 Frame = +3

Query: 183 GTDAAGYSGERSGGHNDHLTHHQAQLGERLYPRVHSL 293
           G  +AG  GER GG+ D   HHQ Q      PRV  L
Sbjct: 40  GGSSAGRHGERGGGYPDLHHHHQQQQLPMAAPRVEKL 76


>04_04_1547 - 34306836-34308713,34308938-34309048,34310056-34310202
          Length = 711

 Score = 28.3 bits (60), Expect = 4.6
 Identities = 11/25 (44%), Positives = 14/25 (56%)
 Frame = +3

Query: 210 ERSGGHNDHLTHHQAQLGERLYPRV 284
           ER+ GH  H  HHQ+  G  L  R+
Sbjct: 426 ERAHGHRSHRDHHQSSRGSTLSSRL 450


>04_03_0515 + 16698589-16701066
          Length = 825

 Score = 27.5 bits (58), Expect = 8.0
 Identities = 13/36 (36%), Positives = 22/36 (61%)
 Frame = -1

Query: 294 EANVLLDKVFRRVVPDDVLDDHYDLRYVLRYNRRHQ 187
           EAN+LL+K+F   V  D+L  +  +R + +  RR +
Sbjct: 663 EANMLLEKLFSMNVKFDILTFNIVIRAMFKVGRRQE 698


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,648,463
Number of Sequences: 37544
Number of extensions: 206754
Number of successful extensions: 735
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 721
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 735
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)