Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E10
(573 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein. 105 1e-22
U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein. 104 3e-22
AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced prote... 104 3e-22
DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein. 68 2e-11
BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein... 68 2e-11
BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein... 68 2e-11
AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein... 68 2e-11
AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific poly(A)... 68 2e-11
Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding pro... 67 4e-11
Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for ... 67 4e-11
U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein p... 67 4e-11
BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein... 67 4e-11
BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein... 67 4e-11
BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein. 67 4e-11
AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open rea... 66 1e-10
AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open read... 66 1e-10
AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open read... 66 1e-10
U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding pro... 62 2e-09
U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding... 62 2e-09
BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein. 62 2e-09
BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein. 62 2e-09
BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein. 62 2e-09
AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein... 62 2e-09
AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein... 62 2e-09
AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein... 62 2e-09
AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protei... 62 2e-09
AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protei... 62 2e-09
AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein... 62 2e-09
AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein... 62 2e-09
AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein... 62 2e-09
AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant ... 62 2e-09
AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open read... 61 3e-09
AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant ... 61 3e-09
AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens ... 60 4e-09
AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open read... 60 5e-09
AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open read... 59 1e-08
>AB020703-1|BAA74919.3| 2820|Homo sapiens KIAA0896 protein protein.
Length = 2820
Score = 105 bits (251), Expect = 1e-22
Identities = 67/148 (45%), Positives = 82/148 (55%), Gaps = 5/148 (3%)
Frame = +3
Query: 141 LSVDARPYSPQAAPGTDAAGYSGERSGGHNDHLTHHQAQLGERLYPRVHSLHPTFAGKIT 320
LS+D RP+ P + G S H QA LGERLYPRV ++ P FA KIT
Sbjct: 2390 LSIDTRPFRPAS---------EGNPSDDPEPLPAHRQA-LGERLYPRVQAMQPAFASKIT 2439
Query: 321 GMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE----AILDLDVFSLSER-XXXX 485
GMLLEL+PAQLL+LLASED+LR +V EAM+LI+ H E +ILDL + SE+
Sbjct: 2440 GMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHGRENGADSILDLGLVDSSEKVQENR 2499
Query: 486 XXXXXXXXXXXXXTPTSDPADDAAPLFY 569
+D DD APLFY
Sbjct: 2500 KRHGSSRSVVDMDLDDTDDGDDNAPLFY 2527
>U95000-1|AAF88143.1| 2798|Homo sapiens hyd protein protein.
Length = 2798
Score = 104 bits (249), Expect = 3e-22
Identities = 67/149 (44%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Frame = +3
Query: 141 LSVDARPYSPQAAPGTDAAGYSGERSGGHNDHLTHHQAQLGERLYPRVHSLHPTFAGKIT 320
LS+D RP+ P + G S H QA LGERLYPRV ++ P FA KIT
Sbjct: 2367 LSIDTRPFRPAS---------EGNPSDDPEPLPAHRQA-LGERLYPRVQAMQPAFASKIT 2416
Query: 321 GMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE----AILDLDVFSLSER--XXX 482
GMLLEL+PAQLL+LLASED+LR +V EAM+LI+ H E +ILDL + SE+
Sbjct: 2417 GMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHGRENGADSILDLGLVDSSEKVQQEN 2476
Query: 483 XXXXXXXXXXXXXXTPTSDPADDAAPLFY 569
+D DD APLFY
Sbjct: 2477 RKRHGSSRSVVNMDLDDTDDGDDNAPLFY 2505
>AF006010-1|AAD01259.2| 2799|Homo sapiens progestin induced protein
protein.
Length = 2799
Score = 104 bits (249), Expect = 3e-22
Identities = 67/149 (44%), Positives = 82/149 (55%), Gaps = 6/149 (4%)
Frame = +3
Query: 141 LSVDARPYSPQAAPGTDAAGYSGERSGGHNDHLTHHQAQLGERLYPRVHSLHPTFAGKIT 320
LS+D RP+ P + G S H QA LGERLYPRV ++ P FA KIT
Sbjct: 2368 LSIDTRPFRPAS---------EGNPSDDPEPLPAHRQA-LGERLYPRVQAMQPAFASKIT 2417
Query: 321 GMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE----AILDLDVFSLSER--XXX 482
GMLLEL+PAQLL+LLASED+LR +V EAM+LI+ H E +ILDL + SE+
Sbjct: 2418 GMLLELSPAQLLLLLASEDSLRARVDEAMELIIAHGRENGADSILDLGLVDSSEKVQQEN 2477
Query: 483 XXXXXXXXXXXXXXTPTSDPADDAAPLFY 569
+D DD APLFY
Sbjct: 2478 RKRHGSSRSVVDMDLDDTDDGDDNAPLFY 2506
>DQ120640-1|ABB92425.1| 630|Homo sapiens PABP3 protein.
Length = 630
Score = 68.1 bits (159), Expect = 2e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 557 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>BC045608-1|AAH45608.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 68.1 bits (159), Expect = 2e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 557 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>BC027617-1|AAH27617.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 68.1 bits (159), Expect = 2e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 557 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>AL359757-1|CAH70805.1| 631|Homo sapiens poly(A) binding protein,
cytoplasmic 3 protein.
Length = 631
Score = 68.1 bits (159), Expect = 2e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 557 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>AF132026-1|AAG38953.1| 631|Homo sapiens testis-specific
poly(A)-binding protein protein.
Length = 631
Score = 68.1 bits (159), Expect = 2e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 557 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLYMLESPESLRSKVDEAVAVLQAHQAK 615
>Z48501-1|CAA88401.1| 522|Homo sapiens polyadenylate binding
protein II protein.
Length = 522
Score = 67.3 bits (157), Expect = 4e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 448 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 506
>Y00345-1|CAA68428.1| 633|Homo sapiens protein ( Human mRNA for
polyA binding protein. ).
Length = 633
Score = 67.3 bits (157), Expect = 4e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 559 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 617
>U68104-1|AAD08718.1| 636|Homo sapiens poly(A)-binding protein
protein.
Length = 636
Score = 67.3 bits (157), Expect = 4e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 562 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
>BC041863-1|AAH41863.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 67.3 bits (157), Expect = 4e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 562 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
>BC023520-1|AAH23520.1| 636|Homo sapiens poly(A) binding protein,
cytoplasmic 1 protein.
Length = 636
Score = 67.3 bits (157), Expect = 4e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 562 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
>BC015958-1|AAH15958.1| 636|Homo sapiens PABPC1 protein protein.
Length = 636
Score = 67.3 bits (157), Expect = 4e-11
Identities = 30/59 (50%), Positives = 45/59 (76%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGERL+P + ++HPT AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H ++
Sbjct: 562 LGERLFPLIQAMHPTLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAHQAK 620
>AL109839-10|CAI95639.1| 168|Homo sapiens chromosome 20 open
reading frame 119 protein.
Length = 168
Score = 65.7 bits (153), Expect = 1e-10
Identities = 30/62 (48%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +3
Query: 243 HHQAQL-GERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 419
H Q Q+ GERLYP +H +H AGKITGMLLE+ ++LL++L S ++L K+ EA+ ++
Sbjct: 96 HEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ 155
Query: 420 MH 425
H
Sbjct: 156 AH 157
>AL109839-1|CAI95631.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 65.7 bits (153), Expect = 1e-10
Identities = 30/62 (48%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +3
Query: 243 HHQAQL-GERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 419
H Q Q+ GERLYP +H +H AGKITGMLLE+ ++LL++L S ++L K+ EA+ ++
Sbjct: 542 HEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ 601
Query: 420 MH 425
H
Sbjct: 602 AH 603
>AL008725-4|CAI95662.1| 614|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 614
Score = 65.7 bits (153), Expect = 1e-10
Identities = 30/62 (48%), Positives = 44/62 (70%), Gaps = 1/62 (1%)
Frame = +3
Query: 243 HHQAQL-GERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 419
H Q Q+ GERLYP +H +H AGKITGMLLE+ ++LL++L S ++L K+ EA+ ++
Sbjct: 542 HEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKIDEAVAVLQ 601
Query: 420 MH 425
H
Sbjct: 602 AH 603
>U75686-1|AAB97309.1| 644|Homo sapiens polyadenylate binding
protein protein.
Length = 644
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 571 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>U33818-1|AAC50350.1| 644|Homo sapiens inducible poly(A)-binding
protein protein.
Length = 644
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 571 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>BC094755-1|AAH94755.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 587 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
>BC071591-1|AAH71591.1| 660|Homo sapiens PABPC4 protein protein.
Length = 660
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 587 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
>BC065540-1|AAH65540.1| 631|Homo sapiens PABPC4 protein protein.
Length = 631
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 558 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 613
>AL845289-3|CAI12300.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibletaining 6 protein.
Length = 644
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 571 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>AL845289-2|CAI12298.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleseudogene protein.
Length = 660
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 587 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
>AL845289-1|CAI12299.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducibleeudogene protein.
Length = 615
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 542 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 597
>AL365277-15|CAI16425.1| 410|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 410
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 337 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 392
>AL365277-13|CAI16423.1| 194|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblela) protein.
Length = 194
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 125 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 180
>AL365277-4|CAI16414.1| 644|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblepeptide, antigen CD29 includes
protein.
Length = 644
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 571 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 626
>AL365277-3|CAI16412.1| 660|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (inducible) pseudogene protein.
Length = 660
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 587 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 642
>AL365277-2|CAI16413.1| 615|Homo sapiens poly(A) binding protein,
cytoplasmic 4 (induciblely, member 5 protein.
Length = 615
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 542 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 597
>AB208962-1|BAD92199.1| 358|Homo sapiens PABPC4 protein variant
protein.
Length = 358
Score = 61.7 bits (143), Expect = 2e-09
Identities = 28/56 (50%), Positives = 41/56 (73%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA+ ++ H
Sbjct: 285 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAVAVLQAH 340
>AL109839-9|CAI95638.1| 171|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 171
Score = 60.9 bits (141), Expect = 3e-09
Identities = 28/55 (50%), Positives = 40/55 (72%), Gaps = 1/55 (1%)
Frame = +3
Query: 243 HHQAQL-GERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREA 404
H Q Q+ GERLYP +H +H AGKITGMLLE+ ++LL++L S ++L K R++
Sbjct: 96 HEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKKRKS 150
>AK222917-1|BAD96637.1| 371|Homo sapiens PABPC4 protein variant
protein.
Length = 371
Score = 60.9 bits (141), Expect = 3e-09
Identities = 28/56 (50%), Positives = 40/56 (71%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMH 425
LGERL+P + ++H AGKITGMLLE+ ++LL +L S ++LR KV EA ++ H
Sbjct: 298 LGERLFPLIQTMHSNLAGKITGMLLEIDNSELLHMLESPESLRSKVDEAAAVLQAH 353
>AK127880-1|BAC87174.1| 146|Homo sapiens protein ( Homo sapiens
cDNA FLJ45986 fis, clone PUAEN2000594, highly similar
to Polyadenylate-binding protein 1. ).
Length = 146
Score = 60.5 bits (140), Expect = 4e-09
Identities = 27/59 (45%), Positives = 43/59 (72%)
Frame = +3
Query: 258 LGERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSE 434
LGE L+P + ++HPT AGKITG+LLE+ ++LL +L S ++L KV EA+ ++ H ++
Sbjct: 72 LGEWLFPLIQAMHPTLAGKITGVLLEIDNSELLHMLKSPESLHSKVDEAVAVLQAHQAK 130
>AL109839-8|CAI95637.1| 149|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 149
Score = 60.1 bits (139), Expect = 5e-09
Identities = 27/52 (51%), Positives = 38/52 (73%), Gaps = 1/52 (1%)
Frame = +3
Query: 243 HHQAQL-GERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKV 395
H Q Q+ GERLYP +H +H AGKITGMLLE+ ++LL++L S ++L K+
Sbjct: 96 HEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKI 147
>AL109839-7|CAI95636.1| 151|Homo sapiens chromosome 20 open reading
frame 119 protein.
Length = 151
Score = 59.3 bits (137), Expect = 1e-08
Identities = 27/53 (50%), Positives = 38/53 (71%), Gaps = 1/53 (1%)
Frame = +3
Query: 243 HHQAQL-GERLYPRVHSLHPTFAGKITGMLLELTPAQLLVLLASEDALRQKVR 398
H Q Q+ GERLYP +H +H AGKITGMLLE+ ++LL++L S ++L K +
Sbjct: 77 HEQKQMIGERLYPLIHDVHTQLAGKITGMLLEIDNSELLLMLESPESLHAKAQ 129
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 65,572,695
Number of Sequences: 237096
Number of extensions: 1070105
Number of successful extensions: 6262
Number of sequences better than 10.0: 36
Number of HSP's better than 10.0 without gapping: 6108
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6251
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5872755824
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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