Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E10
         (573 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical pr...    53   2e-07
U24123-1|AAA65224.1|  646|Caenorhabditis elegans polyadenylate-b...    50   1e-06
AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical ...    50   1e-06
AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical ...    50   1e-06
AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical ...    50   1e-06
AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical ...    28   4.1  
Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical pr...    27   9.5  

>Z50110-1|CAA90444.1|  692|Caenorhabditis elegans Hypothetical
           protein F18H3.3a protein.
          Length = 692

 Score = 52.8 bits (121), Expect = 2e-07
 Identities = 35/101 (34%), Positives = 48/101 (47%), Gaps = 11/101 (10%)
 Frame = +3

Query: 168 PQAAPGTDAAGYSGERSGGHNDHLTHHQAQ---------LGERLYPRVHSLHPTF--AGK 314
           P   PG    G SG    G     +H  AQ         LGER+Y  +  + P    AGK
Sbjct: 582 PAQQPGQQGQGQSGIVIHGQETLTSHMLAQAAPQEQKQLLGERIYALIEKMFPNHKEAGK 641

Query: 315 ITGMLLELTPAQLLVLLASEDALRQKVREAMDLIVMHPSEA 437
           ITGM+LE+  A+L+++L   +  R KV EA  ++    S A
Sbjct: 642 ITGMMLEIDNAELIMMLQDAELFRSKVEEAFGVLTNAQSAA 682


>U24123-1|AAA65224.1|  646|Caenorhabditis elegans
           polyadenylate-binding protein protein.
          Length = 646

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTF--AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 419
           LGER+Y  +  L+P    AGKITGM+LE+  ++L+++L   +  R KV EA  ++V
Sbjct: 586 LGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLV 641


>AL032631-4|CAE54917.1|  586|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2c protein.
          Length = 586

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTF--AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 419
           LGER+Y  +  L+P    AGKITGM+LE+  ++L+++L   +  R KV EA  ++V
Sbjct: 526 LGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLV 581


>AL032631-3|CAE54916.1|  583|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2b protein.
          Length = 583

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTF--AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 419
           LGER+Y  +  L+P    AGKITGM+LE+  ++L+++L   +  R KV EA  ++V
Sbjct: 523 LGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLV 578


>AL032631-2|CAA21572.1|  646|Caenorhabditis elegans Hypothetical
           protein Y106G6H.2a protein.
          Length = 646

 Score = 50.0 bits (114), Expect = 1e-06
 Identities = 24/56 (42%), Positives = 37/56 (66%), Gaps = 2/56 (3%)
 Frame = +3

Query: 258 LGERLYPRVHSLHPTF--AGKITGMLLELTPAQLLVLLASEDALRQKVREAMDLIV 419
           LGER+Y  +  L+P    AGKITGM+LE+  ++L+++L   +  R KV EA  ++V
Sbjct: 586 LGERIYALIEKLYPGHKDAGKITGMMLEIDNSELIMMLQDSELFRSKVDEAASVLV 641


>AL033514-4|CAA22094.2|  827|Caenorhabditis elegans Hypothetical
           protein Y75B8A.3 protein.
          Length = 827

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 12/22 (54%), Positives = 14/22 (63%)
 Frame = +3

Query: 177 APGTDAAGYSGERSGGHNDHLT 242
           APGT  A Y+   +GG N HLT
Sbjct: 796 APGTAQAQYTNNANGGSNFHLT 817


>Z79598-2|CAB01864.1|  738|Caenorhabditis elegans Hypothetical
           protein C44H4.2 protein.
          Length = 738

 Score = 27.1 bits (57), Expect = 9.5
 Identities = 21/57 (36%), Positives = 28/57 (49%), Gaps = 5/57 (8%)
 Frame = +3

Query: 249 QAQLGE-RLYPRVHSLH----PTFAGKITGMLLELTPAQLLVLLASEDALRQKVREA 404
           Q  LG+ R  PR HS      P+   +      ELTP Q ++L + ED +RQ   EA
Sbjct: 481 QIDLGKSRSLPRGHSRFILDKPSTREQSVEPTEELTPIQPIILPSREDEIRQSSMEA 537


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,121,033
Number of Sequences: 27780
Number of extensions: 161459
Number of successful extensions: 626
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 597
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 622
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1184216096
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)