Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E08
         (600 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces p...    26   4.8  
SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces pom...    26   4.8  
SPBCPT2R1.08c |tlh2||RecQ type DNA helicase Tlh1|Schizosaccharom...    26   4.8  
SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr 2||...    25   8.5  
SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|ch...    25   8.5  

>SPAC10F6.10 |||protein kinase, RIO family |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 521

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 13/46 (28%), Positives = 21/46 (45%), Gaps = 4/46 (8%)
 Frame = +2

Query: 185 KDVKLYYHSLFKPKHIHTAYYKVRVF----RNTWFMGYYLFMHGYN 310
           K+  +Y+ +    KH     YK  +     R+ +  G + F HGYN
Sbjct: 154 KEANVYHATNEDGKHFAIKIYKTSILVFKDRDRYVSGEFRFRHGYN 199


>SPAC212.11 |tlh1||RecQ type DNA helicase|Schizosaccharomyces
           pombe|chr 1||Partial|Manual
          Length = 1887

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 331 KDNIYWIKKTTKYRYRMIYLLLNR 402
           ++ +YW  +  KY+ R +YL+  R
Sbjct: 882 QEMVYWTLRNGKYKTRELYLMFGR 905


>SPBCPT2R1.08c |tlh2||RecQ type DNA helicase
           Tlh1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1919

 Score = 25.8 bits (54), Expect = 4.8
 Identities = 8/24 (33%), Positives = 15/24 (62%)
 Frame = +1

Query: 331 KDNIYWIKKTTKYRYRMIYLLLNR 402
           ++ +YW  +  KY+ R +YL+  R
Sbjct: 882 QEMVYWTLRNGKYKTRELYLMFGR 905


>SPBC646.07c |||enoyl reductase|Schizosaccharomyces pombe|chr
           2|||Manual
          Length = 295

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 11/32 (34%), Positives = 17/32 (53%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 QMTMWALGNTVT-TERVSNYPKGRKAILPFVI 216
           QM +WA        +   NYP+ RK ++PF +
Sbjct: 264 QMFVWAKKKHARYLKEFPNYPRSRKIMIPFFL 295


>SPAC4G8.08 |||iron ion transporter |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 271

 Score = 25.0 bits (52), Expect = 8.5
 Identities = 7/18 (38%), Positives = 13/18 (72%)
 Frame = -1

Query: 114 PTTVPWYICHDGEETTIQ 61
           PTTV W++C++  +  +Q
Sbjct: 148 PTTVSWWVCYEESKKYLQ 165


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,420,405
Number of Sequences: 5004
Number of extensions: 49202
Number of successful extensions: 103
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 100
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 103
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 262236260
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)