Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E08
         (600 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

02_03_0201 + 16302797-16302799,16303949-16304084,16304163-163042...    29   3.8  
03_02_1007 + 13160772-13161311                                         28   5.0  
09_04_0503 - 18170645-18170858,18171029-18171222,18171419-181716...    28   6.6  
08_02_1556 - 27852247-27852738,27853005-27853197,27854006-278540...    27   8.7  

>02_03_0201 +
           16302797-16302799,16303949-16304084,16304163-16304250,
           16305531-16305683,16306647-16306809,16306906-16307090,
           16307164-16307337,16308055-16308200,16308369-16308492,
           16308608-16308788,16309302-16309371,16310155-16310196,
           16310276-16310394,16310474-16310672,16311442-16311573,
           16312435-16312538,16312641-16312820,16314000-16314090,
           16314100-16314139,16314225-16314364,16314500-16314660,
           16314897-16315020,16315104-16315255
          Length = 968

 Score = 28.7 bits (61), Expect = 3.8
 Identities = 14/50 (28%), Positives = 26/50 (52%), Gaps = 3/50 (6%)
 Frame = -1

Query: 150 VSESPHSHLDIQPTTVP---WYICHDGEETTIQIHKVVGLVRFLQPGGSI 10
           VS  PH  + I+PT +P     +  DG++   ++ ++V  + F  P  S+
Sbjct: 567 VSSLPHLFIQIEPTLLPIMRRMLTSDGQDVYEEVLEIVSYMTFFSPSISL 616


>03_02_1007 + 13160772-13161311
          Length = 179

 Score = 28.3 bits (60), Expect = 5.0
 Identities = 12/32 (37%), Positives = 17/32 (53%)
 Frame = +3

Query: 36  GRGQLPYEFGSWFLHHHDKCTTGLLWAGCPDD 131
           GR Q   +FGSW+  H    ++  LW   P+D
Sbjct: 120 GRSQ---QFGSWWSRHDSSSSSSFLWPPPPND 148


>09_04_0503 -
           18170645-18170858,18171029-18171222,18171419-18171629,
           18172162-18172553,18172926-18173054,18173353-18173487,
           18173885-18174088,18174716-18174771,18174793-18174950,
           18175864-18176231
          Length = 686

 Score = 27.9 bits (59), Expect = 6.6
 Identities = 11/27 (40%), Positives = 15/27 (55%)
 Frame = +1

Query: 19  PGLQESDEANYLMNLDRGFFTIMTNVP 99
           P  + SD+  Y +    GFF I+TN P
Sbjct: 209 PVQKRSDKVQYFLEHHNGFFYILTNAP 235


>08_02_1556 -
           27852247-27852738,27853005-27853197,27854006-27854070,
           27854161-27854199,27854572-27854592,27854819-27855052,
           27855420-27855504,27855953-27856026,27856516-27856647,
           27856735-27856834,27857296-27857361,27857472-27857509,
           27858013-27858219,27858378-27858427,27858871-27858940,
           27859065-27859133,27859456-27859530,27860456-27860530,
           27860887-27860934
          Length = 710

 Score = 27.5 bits (58), Expect = 8.7
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 203 YHSLFKPKHIHTAYYKVRVFRNTWFMGYYLFMHGY 307
           YH LF+    H+     +  RN W+ G  LF  G+
Sbjct: 173 YHRLFRKWFPHSGSEFEKDLRNEWWRGLELFWQGH 207


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,802,412
Number of Sequences: 37544
Number of extensions: 286318
Number of successful extensions: 553
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 545
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 553
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1435654836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)