Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E08
         (600 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha...    32   0.27 
U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine rece...    31   0.83 
AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine re...    28   4.4  

>AC006608-6|AAF39753.1|  308|Caenorhabditis elegans Steroid alpha
           reductase familyprotein 1 protein.
          Length = 308

 Score = 32.3 bits (70), Expect = 0.27
 Identities = 15/32 (46%), Positives = 20/32 (62%), Gaps = 1/32 (3%)
 Frame = +1

Query: 124 QMTMWALGNTVT-TERVSNYPKGRKAILPFVI 216
           QM +WA G      +   +YPK RKAI+PFV+
Sbjct: 277 QMAIWAQGKHRNYLKEFPDYPKNRKAIVPFVL 308


>U80024-9|AAK18886.1|  300|Caenorhabditis elegans Serpentine
           receptor, class bc (class b-like) protein 10 protein.
          Length = 300

 Score = 30.7 bits (66), Expect = 0.83
 Identities = 17/44 (38%), Positives = 24/44 (54%), Gaps = 10/44 (22%)
 Frame = +1

Query: 337 NIYWIKKTTKYRYRMIYLLLN----------RCAHPIFMLTYSH 438
           NIY+IKK T+ R+RMI+               CA+ IF + YS+
Sbjct: 38  NIYFIKKITRIRHRMIFFFYRIFVDISYGVLACAYMIFCILYSY 81


>AC006776-7|AAF60623.1|  361|Caenorhabditis elegans Serpentine
           receptor, class w protein100 protein.
          Length = 361

 Score = 28.3 bits (60), Expect = 4.4
 Identities = 14/40 (35%), Positives = 19/40 (47%)
 Frame = +1

Query: 316 KASFDKDNIYWIKKTTKYRYRMIYLLLNRCAHPIFMLTYS 435
           KA FDK     I  T    Y ++ + +N   HPIF +  S
Sbjct: 285 KAFFDKSEAVVILSTDLALYFLVLVTINAILHPIFCILMS 324


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,258,101
Number of Sequences: 27780
Number of extensions: 268011
Number of successful extensions: 626
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 611
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 626
length of database: 12,740,198
effective HSP length: 78
effective length of database: 10,573,358
effective search space used: 1279376318
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)