Samia BLAST Result against bee

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E08
         (600 letters)

Database: bee 
           438 sequences; 146,343 total letters

Searching......................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chlor...    25   0.43 
DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GP...    25   0.43 
AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellif...    23   3.0  
DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.               21   9.2  

>DQ667188-1|ABG75740.1|  383|Apis mellifera histamine-gated chloride
           channel protein.
          Length = 383

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 13/41 (31%), Positives = 20/41 (48%)
 Frame = -1

Query: 171 DSFCSYGVSESPHSHLDIQPTTVPWYICHDGEETTIQIHKV 49
           D F +   ++S  +   ++P TV +  C  G  T I I KV
Sbjct: 322 DEFKTPMRNDSERNRSPVRPATVQYDTCCQGRATAIYIDKV 362


>DQ201783-1|ABB05503.1|  381|Apis mellifera capa receptor-like GPCR
           protein.
          Length = 381

 Score = 25.4 bits (53), Expect = 0.43
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 210 RYLNQNTFIPHIIKFGYFVIRGLWGIIYLCMVII 311
           +YL+    IP  I +    + G++G I  C VII
Sbjct: 33  KYLSMRMVIPLTIIYMIIFVTGIFGNITTCTVII 66


>AJ968562-1|CAI91546.1|  998|Apis mellifera protein ( Apis mellifera
           ORF for hypotheticalprotein. ).
          Length = 998

 Score = 22.6 bits (46), Expect = 3.0
 Identities = 12/41 (29%), Positives = 19/41 (46%)
 Frame = -1

Query: 198 SFTSFGIVRDSFCSYGVSESPHSHLDIQPTTVPWYICHDGE 76
           S  S  +   + C Y    S    L +  T++P YIC+ G+
Sbjct: 623 SLNSTNVTLSTKCPYPSYYSYIGVLTLVATSMPTYICYLGK 663


>DQ435324-1|ABD92639.1|  152|Apis mellifera OBP3 protein.
          Length = 152

 Score = 21.0 bits (42), Expect = 9.2
 Identities = 8/19 (42%), Positives = 11/19 (57%)
 Frame = +3

Query: 81  HHDKCTTGLLWAGCPDDYV 137
           + DKC T   ++ C  DYV
Sbjct: 107 NEDKCLTAQKFSRCVIDYV 125


  Database: bee
    Posted date:  Oct 23, 2007  1:17 PM
  Number of letters in database: 146,343
  Number of sequences in database:  438
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 169,337
Number of Sequences: 438
Number of extensions: 3969
Number of successful extensions: 8
Number of sequences better than 10.0: 4
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 8
length of database: 146,343
effective HSP length: 55
effective length of database: 122,253
effective search space used: 17604432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)