Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E07
         (624 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|c...    46   4e-06
SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar ...    27   2.9  
SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6 |Sc...    26   3.8  
SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces pomb...    26   3.8  
SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase Ubp12|Schizo...    26   5.1  
SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr 1|||...    26   5.1  

>SPCC1620.08 |||succinate-CoA ligase |Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 433

 Score = 46.0 bits (104), Expect = 4e-06
 Identities = 21/47 (44%), Positives = 32/47 (68%)
 Frame = +2

Query: 23  ARKLIAESGLRIVPRDDLDEAAQLVVQLCEIVTLAKKAGVEVKFDIP 163
           A+++I  SGLRI   DDLDEAA+   +   +V +A++A V V F++P
Sbjct: 386 AKEVINNSGLRIFSFDDLDEAAKKACRFSRVVEMAREADVNVSFELP 432


>SPCC737.09c |hmt1|SPCC74.08c|ATP-binding cassette-type vacuolar
           membrane transporter Hmt1|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 830

 Score = 26.6 bits (56), Expect = 2.9
 Identities = 11/29 (37%), Positives = 19/29 (65%), Gaps = 1/29 (3%)
 Frame = +2

Query: 287 YLRFRIYYYCNVIIITYCKLYSHV-VTTW 370
           +++F IY+   V+I+T C  Y  V +T+W
Sbjct: 400 FIKFDIYFTLIVLIMTLCYCYVTVKITSW 428


>SPAC222.04c |ies6||chromatin remodeling complex subunit Ies6
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 117

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 11/27 (40%), Positives = 17/27 (62%)
 Frame = -3

Query: 502 KSKRLVRKLHNNDSIYNEYIKLSYSSV 422
           +  R +R++  ND + NE  K SYSS+
Sbjct: 29  RRNRNLRQIIQNDPVQNEPSKFSYSSI 55


>SPBC216.05 |rad3||ATR checkpoint kinase|Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 2386

 Score = 26.2 bits (55), Expect = 3.8
 Identities = 16/42 (38%), Positives = 23/42 (54%), Gaps = 5/42 (11%)
 Frame = -1

Query: 234 KFDIIIMRDEENTVYFF----YFSSMN-LGMSNLTSTPAFLA 124
           KFD++I+  EE   +FF    +F+  + L  SN  S P F A
Sbjct: 208 KFDLLIINIEEACTFFFESAHFFAQCSYLKKSNFPSPPLFTA 249


>SPCC1494.05c |ubp12||ubiquitin C-terminal hydrolase
           Ubp12|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 979

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 10/19 (52%), Positives = 15/19 (78%)
 Frame = +1

Query: 229 EFLAFVLISIHFAINRIFE 285
           EFLAF+L  +H  +NRI++
Sbjct: 405 EFLAFLLDGLHEDLNRIYQ 423


>SPAC9G1.07 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 418

 Score = 25.8 bits (54), Expect = 5.1
 Identities = 13/33 (39%), Positives = 18/33 (54%)
 Frame = -1

Query: 207 EENTVYFFYFSSMNLGMSNLTSTPAFLASVTIS 109
           E NT+ F  FSS +  +S    TPA + S+  S
Sbjct: 350 EPNTLIFQNFSSPSTSLSAPKDTPAVIQSINTS 382


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,946,841
Number of Sequences: 5004
Number of extensions: 34363
Number of successful extensions: 96
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 94
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 96
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 275671126
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)