Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E07
         (624 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

06_01_0451 + 3194919-3195416,3195560-3195580,3196282-3196467,319...    29   3.0  
03_02_0849 - 11768191-11771412                                         29   4.0  
09_03_0118 - 12492206-12492415,12492746-12492816,12493611-124936...    28   5.2  

>06_01_0451 +
           3194919-3195416,3195560-3195580,3196282-3196467,
           3197272-3197556
          Length = 329

 Score = 29.1 bits (62), Expect = 3.0
 Identities = 9/24 (37%), Positives = 19/24 (79%)
 Frame = +1

Query: 502 YIIGDITQVVNQIYITCHIVLNRK 573
           Y+IG + +V +++++TC IV++ K
Sbjct: 289 YVIGKLVRVTHKVHVTCPIVVDAK 312


>03_02_0849 - 11768191-11771412
          Length = 1073

 Score = 28.7 bits (61), Expect = 4.0
 Identities = 14/27 (51%), Positives = 17/27 (62%)
 Frame = -3

Query: 151 FNLDAGFLSECHDLAELHDELRRLVEV 71
           FNL    L EC+ L EL +EL RLV +
Sbjct: 624 FNLQTLDLRECYRLTELPEELSRLVNL 650


>09_03_0118 -
           12492206-12492415,12492746-12492816,12493611-12493634,
           12494061-12494114,12494803-12496345
          Length = 633

 Score = 28.3 bits (60), Expect = 5.2
 Identities = 10/38 (26%), Positives = 21/38 (55%)
 Frame = +2

Query: 281 SNYLRFRIYYYCNVIIITYCKLYSHVVTTWNIIFVIFF 394
           S +LR +    CN+ I+ Y   +   + T+ +++ +FF
Sbjct: 552 STFLRVKYLLSCNLSILKYGHKFHRCIHTFGLLYSVFF 589


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,695,064
Number of Sequences: 37544
Number of extensions: 162477
Number of successful extensions: 393
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 380
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 393
length of database: 14,793,348
effective HSP length: 79
effective length of database: 11,827,372
effective search space used: 1513903616
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)