Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E06
         (502 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr 1...    29   0.39 
SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase |Schizosa...    27   1.2  
SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyce...    27   1.6  
SPAC1805.02c |||electron transfer flavoprotein beta subunit |Sch...    26   2.8  
SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr 1|...    26   3.7  
SPBC30B4.04c |sol1||SWI/SNF complex subunit Sol1|Schizosaccharom...    25   4.8  
SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|c...    25   4.8  
SPBC8D2.15 |||mitochondrial lipoic acid synthetase |Schizosaccha...    25   6.4  
SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|ch...    25   8.4  
SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomy...    25   8.4  

>SPAC1F5.04c |cdc12||formin Cdc12|Schizosaccharomyces pombe|chr
            1|||Manual
          Length = 1841

 Score = 29.1 bits (62), Expect = 0.39
 Identities = 17/60 (28%), Positives = 27/60 (45%), Gaps = 3/60 (5%)
 Frame = +3

Query: 186  THSVQSENDDKARSIISSSTLTMHSACEGENRMDDYLI---PPPPRPLNGCPQFTTFGHP 356
            TH + S  ++KA ++ ++S +T          +   +    PPPP PL       TF HP
Sbjct: 867  THEINSV-ENKAETVSNNSKITNFDIPNDATSLPTIITHPTPPPPPPLPVKTSLNTFSHP 925


>SPBC2G2.02 |syj1||inositol-polyphosphate 5-phosphatase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1076

 Score = 27.5 bits (58), Expect = 1.2
 Identities = 12/24 (50%), Positives = 19/24 (79%)
 Frame = -1

Query: 139 DELSLKLLFGRVFPFLFSIVPLLF 68
           D+L+ ++L G+VFPF FS +P+ F
Sbjct: 768 DQLNKQMLTGKVFPF-FSELPITF 790


>SPAC19G12.07c |rsd1||RNA-binding protein Rsd1|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 604

 Score = 27.1 bits (57), Expect = 1.6
 Identities = 13/42 (30%), Positives = 20/42 (47%)
 Frame = +3

Query: 183 DTHSVQSENDDKARSIISSSTLTMHSACEGENRMDDYLIPPP 308
           D+H  +S    + R   S S+ + H +    +R DDY   PP
Sbjct: 138 DSHQSRSPVRSRDRDRSSRSSRSRHPSSRSRHRYDDYSRSPP 179


>SPAC1805.02c |||electron transfer flavoprotein beta subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 254

 Score = 26.2 bits (55), Expect = 2.8
 Identities = 19/50 (38%), Positives = 23/50 (46%)
 Frame = +3

Query: 324 GCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLN 473
           G PQFT+     +  R +    IV RE     ETL S      +T LRLN
Sbjct: 142 GWPQFTS----ASKVRIEGDKVIVTREIDGGEETLSSTLPAIITTDLRLN 187


>SPAPB1A10.05 |||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 285

 Score = 25.8 bits (54), Expect = 3.7
 Identities = 10/39 (25%), Positives = 20/39 (51%)
 Frame = +1

Query: 181 PTRTAYSRKMMTKQDLLYLQVHSQCILPVREKTEWMTIS 297
           P  ++ S+K    +DLL ++     ++P  +  EW  I+
Sbjct: 67  PQNSSTSKKRPRAEDLLVIEPSQNSLVPSTQNNEWNEIA 105


>SPBC30B4.04c |sol1||SWI/SNF complex subunit
           Sol1|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 865

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 8/14 (57%), Positives = 12/14 (85%)
 Frame = -1

Query: 487 SLLPKFNRKCVLLC 446
           S++PKFNR C+ +C
Sbjct: 708 SVVPKFNRHCLKIC 721


>SPAC105.03c |||transcription factor |Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 708

 Score = 25.4 bits (53), Expect = 4.8
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = +3

Query: 231 ISSSTLTMHSACEGENRMDDYLIPP 305
           ++   L+M+       R DDYL+PP
Sbjct: 454 VNEKWLSMYIGINASIRQDDYLVPP 478


>SPBC8D2.15 |||mitochondrial lipoic acid synthetase
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 370

 Score = 25.0 bits (52), Expect = 6.4
 Identities = 10/23 (43%), Positives = 13/23 (56%)
 Frame = +3

Query: 330 PQFTTFGHPKNDTRGQHMATIVE 398
           P  T F   K+D RG H+ T+ E
Sbjct: 79  PLGTNFNRIKHDLRGSHLHTVCE 101


>SPAC16E8.05c |mde1||sequence orphan|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 209

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 9/26 (34%), Positives = 16/26 (61%)
 Frame = -2

Query: 90  SRLFRYCFHDVSSCRIPAARGIHYLE 13
           SRL R C+ D  + ++   RG+ Y++
Sbjct: 80  SRLLRVCYDDNGTFKVKDKRGLVYVQ 105


>SPAC323.08 |||ribonuclease MRP complex subunit |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 211

 Score = 24.6 bits (51), Expect = 8.4
 Identities = 10/30 (33%), Positives = 17/30 (56%)
 Frame = +3

Query: 21  SGSPGLQEFGTRKHHENNNGTIEKRNGNTR 110
           S SP     GT++  +N+N T++K+    R
Sbjct: 171 SSSPITVSQGTKRKSKNSNSTVKKKKKRAR 200


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,168,612
Number of Sequences: 5004
Number of extensions: 44566
Number of successful extensions: 138
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 138
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 198176188
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)