Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E06
(502 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_02_0601 + 11112201-11112386,11112471-11114080,11114345-111145... 29 1.6
08_01_0070 + 490655-493165 29 2.8
06_03_0743 + 24069752-24070483,24071890-24072345 28 3.7
03_06_0140 + 31951569-31951710,31951943-31952037,31952141-319539... 28 3.7
12_02_1217 + 27082452-27083593,27085041-27085158 28 4.8
04_03_0967 + 21318974-21319140,21321677-21321821,21322045-213221... 28 4.8
02_05_0817 + 31994241-31995908 28 4.8
12_02_1180 + 26727171-26727239,26728782-26729642 27 6.4
10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869 27 8.5
08_02_1527 - 27664106-27664171,27664357-27664524,27664893-276651... 27 8.5
07_03_0698 - 20765305-20768526 27 8.5
03_05_0732 - 27232299-27232535,27232717-27232746,27233094-272331... 27 8.5
02_05_0958 + 33073302-33073442,33073839-33073913,33074382-330744... 27 8.5
>09_02_0601 +
11112201-11112386,11112471-11114080,11114345-11114579,
11115233-11115358
Length = 718
Score = 29.5 bits (63), Expect = 1.6
Identities = 17/62 (27%), Positives = 26/62 (41%)
Frame = +3
Query: 276 NRMDDYLIPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNS 455
N + Y + PP N P FT +GH D +A EA A R+ + ++ +
Sbjct: 49 NELQKYFVFPPGSEKN-LPPFTDYGHISQDDWDTFVADHTTAEALALRKKMSELAKKNRY 107
Query: 456 TH 461
H
Sbjct: 108 PH 109
>08_01_0070 + 490655-493165
Length = 836
Score = 28.7 bits (61), Expect = 2.8
Identities = 17/35 (48%), Positives = 19/35 (54%)
Frame = +3
Query: 237 SSTLTMHSACEGENRMDDYLIPPPPRPLNGCPQFT 341
SSTLT+ EG M PPP PL GC +FT
Sbjct: 436 SSTLTLCRDLEGAVIMPAPEASPPPPPL-GCEEFT 469
>06_03_0743 + 24069752-24070483,24071890-24072345
Length = 395
Score = 28.3 bits (60), Expect = 3.7
Identities = 25/93 (26%), Positives = 43/93 (46%), Gaps = 2/93 (2%)
Frame = +3
Query: 198 QSENDDKARSIISSSTLTMHSACEGENRMD--DYLIPPPPRPLNGCPQFTTFGHPKNDTR 371
+ E++D+A + +++TL + A G ++ Y IP P + L G QF+ K R
Sbjct: 180 EEEDEDEAAAAAATATLPLGCASIGIGKLTKGQYWIPTPSQILIGPTQFSCPVCYKTFNR 239
Query: 372 GQHMATIVEREASASRETLDSESETHNSTHLRL 470
+M + S R+ +S T + LRL
Sbjct: 240 YNNMQMHMWGHGSQYRKGPESLRGTQPTAMLRL 272
>03_06_0140 +
31951569-31951710,31951943-31952037,31952141-31953982,
31954065-31954179,31954260-31954897
Length = 943
Score = 28.3 bits (60), Expect = 3.7
Identities = 18/67 (26%), Positives = 30/67 (44%)
Frame = +3
Query: 192 SVQSENDDKARSIISSSTLTMHSACEGENRMDDYLIPPPPRPLNGCPQFTTFGHPKNDTR 371
SV NDD + + S +T T + EGE+ + L+ +PL+ +P D +
Sbjct: 688 SVTQTNDDTSSNTASETTQTPETFTEGEHHQNLQLVEFKEKPLDDLGDAKETSNP-TDLQ 746
Query: 372 GQHMATI 392
Q M +
Sbjct: 747 DQKMHVV 753
>12_02_1217 + 27082452-27083593,27085041-27085158
Length = 419
Score = 27.9 bits (59), Expect = 4.8
Identities = 17/46 (36%), Positives = 23/46 (50%)
Frame = +3
Query: 270 GENRMDDYLIPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREA 407
GE +D PPPPRPL+G F H +D + ++A R A
Sbjct: 62 GELEEEDSPRPPPPRPLSG-----LFYHTASDNQPGYLAFDAIRSA 102
>04_03_0967 +
21318974-21319140,21321677-21321821,21322045-21322164,
21322261-21322395,21322503-21322564,21322804-21322879,
21323555-21323656,21323732-21323848,21324403-21324461,
21324927-21325101,21325233-21325367,21325429-21325545,
21325686-21325794,21325939-21326051,21326561-21326615,
21326657-21326769
Length = 599
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/27 (44%), Positives = 16/27 (59%)
Frame = -2
Query: 438 IRCPESLLKLKPRVQLLSPCVDPWCRF 358
IR P S LKL+ +++PCV W F
Sbjct: 559 IRTPYSELKLEQNKNVVAPCVGCWAGF 585
>02_05_0817 + 31994241-31995908
Length = 555
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/29 (41%), Positives = 16/29 (55%)
Frame = +3
Query: 237 SSTLTMHSACEGENRMDDYLIPPPPRPLN 323
SS HSA R++ +PPPPR L+
Sbjct: 23 SSLAAAHSANRSSPRLNPTSVPPPPRQLH 51
>12_02_1180 + 26727171-26727239,26728782-26729642
Length = 309
Score = 27.5 bits (58), Expect = 6.4
Identities = 12/27 (44%), Positives = 19/27 (70%)
Frame = -1
Query: 229 IDLALSSFSDCTLCVSATLPPLTVLSR 149
++ LS+ + CT VSA LPP+T+ S+
Sbjct: 37 VEDCLSTSASCTNPVSAELPPITMASQ 63
>10_08_0146 - 15184123-15184968,15185049-15185519,15185606-15185869
Length = 526
Score = 27.1 bits (57), Expect = 8.5
Identities = 20/67 (29%), Positives = 29/67 (43%)
Frame = +3
Query: 213 DKARSIISSSTLTMHSACEGENRMDDYLIPPPPRPLNGCPQFTTFGHPKNDTRGQHMATI 392
D RS++ S + A G + + PPPPRP PQ HP + R +
Sbjct: 41 DNFRSLLRSGEALLRFAFRGNSGQLTHRHPPPPRP---PPQQQ---HPHHHNRPAEIMKR 94
Query: 393 VEREASA 413
++RE A
Sbjct: 95 LQREKFA 101
>08_02_1527 -
27664106-27664171,27664357-27664524,27664893-27665168,
27665687-27665741,27666015-27666088
Length = 212
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/29 (44%), Positives = 16/29 (55%), Gaps = 1/29 (3%)
Frame = +3
Query: 294 LIPPPP-RPLNGCPQFTTFGHPKNDTRGQ 377
L+PPP P PQ TT G K + RG+
Sbjct: 131 LLPPPEILPTRRLPQLTTTGEGKKEWRGR 159
>07_03_0698 - 20765305-20768526
Length = 1073
Score = 27.1 bits (57), Expect = 8.5
Identities = 15/41 (36%), Positives = 19/41 (46%), Gaps = 4/41 (9%)
Frame = +3
Query: 267 EGENRMDDYLIPPPPRPLNGC----PQFTTFGHPKNDTRGQ 377
+G N+ DD PPPP GC P + G K D + Q
Sbjct: 218 DGGNKHDDKEQPPPPVQSGGCVKLQPPLQSDGSDKQDDKVQ 258
>03_05_0732 -
27232299-27232535,27232717-27232746,27233094-27233155,
27233975-27234005,27234618-27234713,27234881-27234969,
27235687-27236263
Length = 373
Score = 27.1 bits (57), Expect = 8.5
Identities = 13/34 (38%), Positives = 15/34 (44%)
Frame = +3
Query: 285 DDYLIPPPPRPLNGCPQFTTFGHPKNDTRGQHMA 386
D+ PPPP P G P F F RG +A
Sbjct: 76 DESRTPPPPPPPMGAPGFGPFRWSPRPLRGAPLA 109
>02_05_0958 +
33073302-33073442,33073839-33073913,33074382-33074497,
33076863-33076977,33077100-33077228,33078907-33078954,
33079343-33079469,33079634-33079789,33080031-33080287,
33080431-33080580,33080660-33080714,33080793-33081088,
33081252-33081335,33081869-33081941,33082164-33082291,
33082905-33083090,33083179-33083316,33083394-33083519,
33083705-33083965
Length = 886
Score = 27.1 bits (57), Expect = 8.5
Identities = 17/39 (43%), Positives = 21/39 (53%)
Frame = -1
Query: 232 IIDLALSSFSDCTLCVSATLPPLTVLSRPDDDELSLKLL 116
I+D L DC L V + LTV DDD+L+LK L
Sbjct: 650 IVDPFLRLVEDCKLQVVESC--LTVYGSKDDDDLALKSL 686
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,124,770
Number of Sequences: 37544
Number of extensions: 326974
Number of successful extensions: 1197
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 1138
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1194
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1059318940
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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