Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E06
(502 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
BC039260-1|AAH39260.1| 765|Homo sapiens RBM12B protein protein. 35 0.18
U15131-1|AAC50925.1| 1137|Homo sapiens p126 protein. 31 1.7
BC036655-1|AAH36655.1| 1137|Homo sapiens suppression of tumorige... 31 1.7
AJ400879-1|CAC35387.1| 1137|Homo sapiens suppression of tumorige... 31 1.7
BC111697-1|AAI11698.1| 983|Homo sapiens RBM26 protein protein. 31 2.3
BC041655-1|AAH41655.1| 980|Homo sapiens RNA binding motif prote... 31 2.3
AL159974-2|CAI12923.3| 980|Homo sapiens RNA binding motif prote... 31 2.3
AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif prote... 31 2.3
AL139006-2|CAI95137.2| 980|Homo sapiens RNA binding motif prote... 31 2.3
AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif prote... 31 2.3
AK125693-1|BAC86247.1| 321|Homo sapiens protein ( Homo sapiens ... 29 9.1
AF198254-1|AAF37203.1| 577|Homo sapiens mRNA-binding protein CR... 29 9.1
>BC039260-1|AAH39260.1| 765|Homo sapiens RBM12B protein protein.
Length = 765
Score = 34.7 bits (76), Expect = 0.18
Identities = 21/63 (33%), Positives = 30/63 (47%)
Frame = +3
Query: 303 PPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLNFGS 482
PPP G PQ T+ GHP++ T G H +I + R T + + HLR G+
Sbjct: 622 PPPEHFGGLPQSTSGGHPQS-TSGGHPQSI---SGARPRSTSGDRPRSISGGHLRSISGA 677
Query: 483 RDR 491
+R
Sbjct: 678 PER 680
>U15131-1|AAC50925.1| 1137|Homo sapiens p126 protein.
Length = 1137
Score = 31.5 bits (68), Expect = 1.7
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 300 PPPPRPLNGCPQFTTFGHPKNDTRGQHMA---TIVEREASASRETLDSESETHNSTHLRL 470
P P PL P PK D RG + E E ++S ++L S T N T +
Sbjct: 416 PAAPPPLPSTPAPPVTRRPKKDMRGHRKSQSRKSFEFEDASSLQSLYPSSPTENGTENQP 475
Query: 471 NFGSR 485
FGS+
Sbjct: 476 KFGSK 480
>BC036655-1|AAH36655.1| 1137|Homo sapiens suppression of
tumorigenicity 5 protein.
Length = 1137
Score = 31.5 bits (68), Expect = 1.7
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 300 PPPPRPLNGCPQFTTFGHPKNDTRGQHMA---TIVEREASASRETLDSESETHNSTHLRL 470
P P PL P PK D RG + E E ++S ++L S T N T +
Sbjct: 416 PAAPPPLPSTPAPPVTRRPKKDMRGHRKSQSRKSFEFEDASSLQSLYPSSPTENGTENQP 475
Query: 471 NFGSR 485
FGS+
Sbjct: 476 KFGSK 480
>AJ400879-1|CAC35387.1| 1137|Homo sapiens suppression of
tumorigenicity 5 protein.
Length = 1137
Score = 31.5 bits (68), Expect = 1.7
Identities = 21/65 (32%), Positives = 28/65 (43%), Gaps = 3/65 (4%)
Frame = +3
Query: 300 PPPPRPLNGCPQFTTFGHPKNDTRGQHMA---TIVEREASASRETLDSESETHNSTHLRL 470
P P PL P PK D RG + E E ++S ++L S T N T +
Sbjct: 416 PAAPPPLPSTPAPPVTRRPKKDMRGHRKSQSRKSFEFEDASSLQSLYPSSPTENGTENQP 475
Query: 471 NFGSR 485
FGS+
Sbjct: 476 KFGSK 480
>BC111697-1|AAI11698.1| 983|Homo sapiens RBM26 protein protein.
Length = 983
Score = 31.1 bits (67), Expect = 2.3
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 297 IPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLNF 476
+PPP +P +G + F H + D + + + ERE SR + S +S+ R N
Sbjct: 82 LPPPEQPSSGSLKVEFFPHQEKDIKKEEITKEEEREKKFSRRL--NHSPPQSSSRYREN- 138
Query: 477 GSRD 488
SRD
Sbjct: 139 RSRD 142
>BC041655-1|AAH41655.1| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 31.1 bits (67), Expect = 2.3
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 297 IPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLNF 476
+PPP +P +G + F H + D + + + ERE SR + S +S+ R N
Sbjct: 82 LPPPEQPSSGSLKVEFFPHQEKDIKKEEITKEEEREKKFSRRL--NHSPPQSSSRYREN- 138
Query: 477 GSRD 488
SRD
Sbjct: 139 RSRD 142
>AL159974-2|CAI12923.3| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 31.1 bits (67), Expect = 2.3
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 297 IPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLNF 476
+PPP +P +G + F H + D + + + ERE SR + S +S+ R N
Sbjct: 82 LPPPEQPSSGSLKVEFFPHQEKDIKKEEITKEEEREKKFSRRL--NHSPPQSSSRYREN- 138
Query: 477 GSRD 488
SRD
Sbjct: 139 RSRD 142
>AL159974-1|CAI12921.2| 1008|Homo sapiens RNA binding motif protein
26 protein.
Length = 1008
Score = 31.1 bits (67), Expect = 2.3
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 297 IPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLNF 476
+PPP +P +G + F H + D + + + ERE SR + S +S+ R N
Sbjct: 83 LPPPEQPSSGSLKVEFFPHQEKDIKKEEITKEEEREKKFSRRL--NHSPPQSSSRYREN- 139
Query: 477 GSRD 488
SRD
Sbjct: 140 RSRD 143
>AL139006-2|CAI95137.2| 980|Homo sapiens RNA binding motif protein
26 protein.
Length = 980
Score = 31.1 bits (67), Expect = 2.3
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 297 IPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLNF 476
+PPP +P +G + F H + D + + + ERE SR + S +S+ R N
Sbjct: 82 LPPPEQPSSGSLKVEFFPHQEKDIKKEEITKEEEREKKFSRRL--NHSPPQSSSRYREN- 138
Query: 477 GSRD 488
SRD
Sbjct: 139 RSRD 142
>AL139006-1|CAI95136.1| 1008|Homo sapiens RNA binding motif protein
26 protein.
Length = 1008
Score = 31.1 bits (67), Expect = 2.3
Identities = 20/64 (31%), Positives = 31/64 (48%)
Frame = +3
Query: 297 IPPPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETLDSESETHNSTHLRLNF 476
+PPP +P +G + F H + D + + + ERE SR + S +S+ R N
Sbjct: 83 LPPPEQPSSGSLKVEFFPHQEKDIKKEEITKEEEREKKFSRRL--NHSPPQSSSRYREN- 139
Query: 477 GSRD 488
SRD
Sbjct: 140 RSRD 143
>AK125693-1|BAC86247.1| 321|Homo sapiens protein ( Homo sapiens
cDNA FLJ43705 fis, clone TESOP2001818. ).
Length = 321
Score = 29.1 bits (62), Expect = 9.1
Identities = 14/37 (37%), Positives = 20/37 (54%)
Frame = +1
Query: 34 GCRNSARGNIMKTITEQSRRETGIPDRIAV*ATVRHR 144
GCR ARG + + +S TG+P+R T R+R
Sbjct: 134 GCRTQARGQRLTSRGRESPEATGVPERRGDPETRRNR 170
>AF198254-1|AAF37203.1| 577|Homo sapiens mRNA-binding protein CRDBP
protein.
Length = 577
Score = 29.1 bits (62), Expect = 9.1
Identities = 15/48 (31%), Positives = 23/48 (47%)
Frame = +3
Query: 204 ENDDKARSIISSSTLTMHSACEGENRMDDYLIPPPPRPLNGCPQFTTF 347
END A S+ S T ++ A G +PPPP + G +++F
Sbjct: 352 ENDVAAMSLQSHLTPGLNLAAVGLFPASSSAVPPPPSSVTGAAPYSSF 399
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 77,936,730
Number of Sequences: 237096
Number of extensions: 1677253
Number of successful extensions: 6397
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 6185
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 6395
length of database: 76,859,062
effective HSP length: 85
effective length of database: 56,705,902
effective search space used: 4593178062
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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