Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E06
(502 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
U12964-1|AAL02497.1| 465|Caenorhabditis elegans Hypothetical pr... 30 1.1
U97194-2|AAN84846.1| 806|Caenorhabditis elegans Prion-like-(q/n... 27 5.8
U97194-1|AAK68236.1| 788|Caenorhabditis elegans Prion-like-(q/n... 27 5.8
U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (gr... 27 5.8
AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative MAP-... 27 5.8
Z22177-5|CAA80150.1| 576|Caenorhabditis elegans Hypothetical pr... 27 7.6
AF095787-1|AAC64972.1| 563|Caenorhabditis elegans EAT-4 protein. 27 7.6
AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical ... 27 7.6
AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical ... 27 7.6
AC024799-10|AAK72319.1| 495|Caenorhabditis elegans Cytochrome p... 27 7.6
>U12964-1|AAL02497.1| 465|Caenorhabditis elegans Hypothetical
protein F26F4.5 protein.
Length = 465
Score = 29.9 bits (64), Expect = 1.1
Identities = 13/42 (30%), Positives = 21/42 (50%)
Frame = +3
Query: 303 PPPRPLNGCPQFTTFGHPKNDTRGQHMATIVEREASASRETL 428
PPP P+ G P T+ K+ T +A++ AS+ E +
Sbjct: 109 PPPMPIEGLPPPTSQNQKKSRTSSSSLASVFRSRASSPIERM 150
>U97194-2|AAN84846.1| 806|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform b protein.
Length = 806
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 258 SACEGENRMDDYLIPPPPRPLNGCPQF-TTF-GHPKNDTRGQHMATIVEREASASRETLD 431
S + E++ PP P PL P+F TT+ H + +T G+ + E + + E ++
Sbjct: 15 SPSDSEDKPSISAPPPLPPPLQETPEFQTTYDAHDQAETSGKEDGELDEDDENDDIEPME 74
Query: 432 SESE 443
+ E
Sbjct: 75 IDEE 78
>U97194-1|AAK68236.1| 788|Caenorhabditis elegans
Prion-like-(q/n-rich)-domain-bearingprotein protein 21,
isoform a protein.
Length = 788
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 258 SACEGENRMDDYLIPPPPRPLNGCPQF-TTF-GHPKNDTRGQHMATIVEREASASRETLD 431
S + E++ PP P PL P+F TT+ H + +T G+ + E + + E ++
Sbjct: 15 SPSDSEDKPSISAPPPLPPPLQETPEFQTTYDAHDQAETSGKEDGELDEDDENDDIEPME 74
Query: 432 SESE 443
+ E
Sbjct: 75 IDEE 78
>U40799-6|AAA81484.2| 210|Caenorhabditis elegans Ground-like (grd
related) protein 4 protein.
Length = 210
Score = 27.5 bits (58), Expect = 5.8
Identities = 15/35 (42%), Positives = 18/35 (51%), Gaps = 4/35 (11%)
Frame = -1
Query: 94 LFSIVPLLFS*----CFLVPNSCSPGDPLFRAPPP 2
LFSI+P+ S C + P C P P APPP
Sbjct: 8 LFSIIPIASSTFGGCCSMGPPPCPPPPPPMCAPPP 42
>AF170425-1|AAF89696.1| 788|Caenorhabditis elegans putative
MAP-like protein protein.
Length = 788
Score = 27.5 bits (58), Expect = 5.8
Identities = 17/64 (26%), Positives = 31/64 (48%), Gaps = 2/64 (3%)
Frame = +3
Query: 258 SACEGENRMDDYLIPPPPRPLNGCPQF-TTF-GHPKNDTRGQHMATIVEREASASRETLD 431
S + E++ PP P PL P+F TT+ H + +T G+ + E + + E ++
Sbjct: 15 SPSDSEDKPSISAPPPLPPPLQETPEFQTTYDAHDQAETSGKEDGELDEDDENDDIEPME 74
Query: 432 SESE 443
+ E
Sbjct: 75 IDEE 78
>Z22177-5|CAA80150.1| 576|Caenorhabditis elegans Hypothetical
protein ZK512.6 protein.
Length = 576
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 166 AAAASPTRTAYSRKMMTKQDLLYLQVHSQCILPVREKTEWM 288
AAAAS T A ++M + + +Q+HS +L V E+T W+
Sbjct: 24 AAAASATGAAPPQQMQEEGNENPMQMHSNKVLQVMEQT-WI 63
>AF095787-1|AAC64972.1| 563|Caenorhabditis elegans EAT-4 protein.
Length = 563
Score = 27.1 bits (57), Expect = 7.6
Identities = 16/41 (39%), Positives = 25/41 (60%)
Frame = +1
Query: 166 AAAASPTRTAYSRKMMTKQDLLYLQVHSQCILPVREKTEWM 288
AAAAS T A ++M + + +Q+HS +L V E+T W+
Sbjct: 11 AAAASATGAAPPQQMQEEGNENPMQMHSNKVLQVMEQT-WI 50
>AC024839-8|AAF60825.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.8 protein.
Length = 383
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 282 MDDYLIPPPPRPLNGCPQFTTFGHPKNDTR-GQHMATIVE 398
+ DY+ PPPP L + T GH + R G+ +T +E
Sbjct: 294 LPDYVAPPPPIALESVAKPTRIGHRHSIYRVGEDKSTELE 333
>AC024839-7|AAF60827.1| 383|Caenorhabditis elegans Hypothetical
protein Y59E9AR.2 protein.
Length = 383
Score = 27.1 bits (57), Expect = 7.6
Identities = 14/40 (35%), Positives = 21/40 (52%), Gaps = 1/40 (2%)
Frame = +3
Query: 282 MDDYLIPPPPRPLNGCPQFTTFGHPKNDTR-GQHMATIVE 398
+ DY+ PPPP L + T GH + R G+ +T +E
Sbjct: 294 LPDYVAPPPPIALESVAKPTRIGHRHSIYRVGEDKSTELE 333
>AC024799-10|AAK72319.1| 495|Caenorhabditis elegans Cytochrome p450
family protein33C11 protein.
Length = 495
Score = 27.1 bits (57), Expect = 7.6
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -1
Query: 241 LEDIIDLALSSFSDCTLCVSATLPPLTVL 155
L+D+ID+ SF+ LCV A +P + L
Sbjct: 196 LKDLIDIQEKSFASFKLCVQAFVPIMNKL 224
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,422,623
Number of Sequences: 27780
Number of extensions: 267545
Number of successful extensions: 939
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 865
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 939
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 956602620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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