Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E05
(523 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
09_04_0677 - 19388888-19389019,19389124-19389216,19389317-193894... 118 3e-27
08_02_0211 - 14333553-14333684,14333795-14333887,14334019-143341... 118 3e-27
01_07_0018 - 40488702-40488833,40488928-40489020,40489125-404892... 93 9e-20
11_06_0061 - 19702893-19703869,19703960-19704098,19704166-197042... 29 1.7
11_03_0212 - 11761856-11762037,11762302-11762398,11763571-117645... 29 1.7
04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410 29 2.3
11_04_0179 + 14562288-14562860,14562874-14563489,14563529-145636... 28 4.0
02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237 28 4.0
02_02_0095 + 6716327-6716335,6717302-6717451,6717523-6717583,671... 28 4.0
08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497 28 5.2
12_01_0831 - 7688342-7688772,7690678-7692610,7693142-7693915,769... 27 6.9
06_03_1228 - 28563546-28563630,28563897-28564000,28564256-285647... 27 6.9
01_06_1729 + 39486553-39487413,39487953-39488020,39489574-394901... 27 6.9
01_06_1440 + 37378121-37378958,37379344-37379494,37379567-373799... 27 6.9
05_05_0175 + 22966151-22967614 27 9.1
02_01_0639 + 4791454-4792106,4792207-4792369,4792618-4793238 27 9.1
01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198 27 9.1
>09_04_0677 -
19388888-19389019,19389124-19389216,19389317-19389445,
19389559-19389728,19390280-19390481,19390576-19390623,
19390797-19390799
Length = 258
Score = 118 bits (284), Expect = 3e-27
Identities = 53/84 (63%), Positives = 66/84 (78%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 24 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 83
Query: 360 TAKGLFKILEKYRPETEAVRKERL 431
A LFK+L KYRPE +A +KERL
Sbjct: 84 LATNLFKMLLKYRPEDKAAKKERL 107
>08_02_0211 -
14333553-14333684,14333795-14333887,14334019-14334105,
14334220-14334389,14334985-14335186,14335604-14335606
Length = 228
Score = 118 bits (284), Expect = 3e-27
Identities = 53/84 (63%), Positives = 66/84 (78%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR K F IG + P +DL RFV+WPK +RIQRQ+ +L++RLKVPP +NQFT+TLDK
Sbjct: 8 LFEKRPKQFGIGGALPPKKDLHRFVKWPKVVRIQRQRRILKQRLKVPPALNQFTRTLDKN 67
Query: 360 TAKGLFKILEKYRPETEAVRKERL 431
A LFK+L KYRPE +A +KERL
Sbjct: 68 LATNLFKMLLKYRPEDKAAKKERL 91
>01_07_0018 -
40488702-40488833,40488928-40489020,40489125-40489253,
40489379-40489500,40490292-40490544,40490636-40490638
Length = 243
Score = 93.5 bits (222), Expect = 9e-20
Identities = 43/77 (55%), Positives = 56/77 (72%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR K F IG + P +DL RFVRWPK +RIQRQ+ VL++RLKVPP +NQFT+TLDK
Sbjct: 25 LFEKRPKQFGIGGALPPRKDLHRFVRWPKAVRIQRQRRVLKQRLKVPPALNQFTRTLDKN 84
Query: 360 TAKGLFKILEKYRPETE 410
++L++ + E E
Sbjct: 85 LGCQKERLLKRAQAEAE 101
>11_06_0061 -
19702893-19703869,19703960-19704098,19704166-19704287,
19704362-19704416,19704508-19704624,19704718-19705413,
19706358-19706393,19707190-19708236
Length = 1062
Score = 29.5 bits (63), Expect = 1.7
Identities = 22/66 (33%), Positives = 29/66 (43%)
Frame = +1
Query: 301 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSRQR 480
SV K + + R ++PQ K ++WR KL G SVY R LR+ S
Sbjct: 315 SVNGKTKEVVVTKVRELLQPQYKWNGKNWRIVSAKLGYDG-SVYHM--AKRHLRQQSMSG 371
Query: 481 KRPKPP 498
K P P
Sbjct: 372 KSPSSP 377
>11_03_0212 -
11761856-11762037,11762302-11762398,11763571-11764545,
11766172-11766263,11766450-11766510
Length = 468
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/68 (29%), Positives = 33/68 (48%), Gaps = 4/68 (5%)
Frame = +3
Query: 201 NFAIGQDIQPTRDLSRFVRWPKYIRI-QRQKAVLQRRLKVPPP--INQFTQTLDK-TTAK 368
N +GQD + ++ +V+ Y I Q+ + +L RLK PP + TQ + K K
Sbjct: 352 NSCMGQDEEVVNSINSYVKQKWYAEILQKDRKILTERLKKKPPAWTAKHTQAVKKIKNCK 411
Query: 369 GLFKILEK 392
+L+K
Sbjct: 412 AAKDVLQK 419
>04_04_0271 + 24069218-24069433,24069695-24070365,24070458-24073410
Length = 1279
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/50 (40%), Positives = 25/50 (50%), Gaps = 1/50 (2%)
Frame = +1
Query: 328 STSSPRH*IKPQPKVCS-RSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSR 474
+ S+ H P P CS G+KL G + RKP K RLL KM+R
Sbjct: 647 AVSATEHRPSPAPSFCSVEHSTEIGRKLVDHGVARSRKPSKLRLL-KMNR 695
>11_04_0179 +
14562288-14562860,14562874-14563489,14563529-14563658,
14563694-14564540
Length = 721
Score = 28.3 bits (60), Expect = 4.0
Identities = 13/28 (46%), Positives = 16/28 (57%)
Frame = +1
Query: 430 YRKPPKPRLLRKMSRQRKRPKPPYALEP 513
+RKP KP L K Q + KPP A +P
Sbjct: 670 WRKPVKPTLSAKKLEQSAQRKPPSASKP 697
>02_04_0445 + 22991394-22992101,22993061-22993252,22993419-22994237
Length = 572
Score = 28.3 bits (60), Expect = 4.0
Identities = 16/66 (24%), Positives = 25/66 (37%)
Frame = -1
Query: 523 VTVLVPARRVALAFYVGXXXXXXXXXXXXXXXRSFLTASVSGLYFSKILNRPLAVVLSNV 344
+T L P R A F L +V G+ F++ LNR A + +
Sbjct: 483 ITELTPTRGFAAEFAAASVVLFASKLGLPISATHTLVGAVMGVGFARGLNRVRAETVREI 542
Query: 343 WVNWLI 326
+WL+
Sbjct: 543 VASWLV 548
>02_02_0095 +
6716327-6716335,6717302-6717451,6717523-6717583,
6717646-6717725,6717802-6717903,6717982-6718471,
6718796-6719171,6720320-6720379,6720887-6721056,
6721287-6721340,6721384-6721523,6722362-6722511,
6722582-6722642,6722705-6722784,6722933-6723034,
6723111-6723612,6724401-6724776,6725419-6725493,
6726058-6726198,6726264-6726282
Length = 1065
Score = 28.3 bits (60), Expect = 4.0
Identities = 12/44 (27%), Positives = 23/44 (52%)
Frame = +1
Query: 364 PKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSRQRKRPKP 495
P+V ++ QK +++ K ++ PKP+ K + + PKP
Sbjct: 783 PQVQKKAAAPKEQKPKEAKKEAPKEAPKPKAAEKPEEEEEAPKP 826
>08_01_1066 - 10887509-10888171,10888782-10888964,10889234-10889497
Length = 369
Score = 27.9 bits (59), Expect = 5.2
Identities = 12/42 (28%), Positives = 23/42 (54%)
Frame = +1
Query: 301 SVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKS 426
+++ +R S++ K QP C+RSW G+ +Q G++
Sbjct: 74 TMIEDLKRSSSADTMEQTK-QPLSCARSWSTCGKSSKQRGRN 114
>12_01_0831 -
7688342-7688772,7690678-7692610,7693142-7693915,
7694019-7694142,7696084-7696189,7696346-7696532
Length = 1184
Score = 27.5 bits (58), Expect = 6.9
Identities = 17/56 (30%), Positives = 27/56 (48%), Gaps = 3/56 (5%)
Frame = +1
Query: 355 KPQP-KVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKM--SRQRKRPKPPYALEP 513
K +P ++ S + Q+ +S S R P PR + + S R PP+AL+P
Sbjct: 128 KSKPIRISGSSTVDNTQRSSRSSASPIRLSPSPRSMSRTRPSSAASRSSPPFALQP 183
>06_03_1228 -
28563546-28563630,28563897-28564000,28564256-28564759,
28564854-28564932,28566053-28566130,28566227-28566268,
28566352-28566449,28566542-28566673,28566757-28566879
Length = 414
Score = 27.5 bits (58), Expect = 6.9
Identities = 13/36 (36%), Positives = 15/36 (41%)
Frame = +2
Query: 224 PANQRSIPFRAMAEIYSHPASKGCVTASSQSAAANQ 331
P NQ P +Y+H AS G V ANQ
Sbjct: 317 PVNQGQFPPAVQTNLYNHAASSGGVREQVHLTQANQ 352
>01_06_1729 + 39486553-39487413,39487953-39488020,39489574-39490154,
39490623-39491432,39491738-39493035
Length = 1205
Score = 27.5 bits (58), Expect = 6.9
Identities = 15/56 (26%), Positives = 24/56 (42%)
Frame = +1
Query: 331 TSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSRQRKRPKPP 498
+S P+ IK + S N + S + PPK + + +Q + PKPP
Sbjct: 1025 SSRPKSNIKEKSSHASGQKSNVQEANANSASHLRAMPPKQKAEAEAKKQIRTPKPP 1080
>01_06_1440 + 37378121-37378958,37379344-37379494,37379567-37379936,
37380021-37380431,37380522-37380820,37380897-37381155,
37381248-37381497,37381744-37381875,37381936-37382208,
37383023-37383267
Length = 1075
Score = 27.5 bits (58), Expect = 6.9
Identities = 19/65 (29%), Positives = 25/65 (38%), Gaps = 3/65 (4%)
Frame = +1
Query: 298 YSVVSKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSVYRK---PPKPRLLRKM 468
+S S RR + P P P +C R L + GK K PP P + R+
Sbjct: 996 HSTKSPLRRAARGPPAKFHAPSPPICRRPPAQYKITLAEGGKGAACKFPCPPSPPICRRP 1055
Query: 469 SRQRK 483
Q K
Sbjct: 1056 PAQYK 1060
>05_05_0175 + 22966151-22967614
Length = 487
Score = 27.1 bits (57), Expect = 9.1
Identities = 14/47 (29%), Positives = 23/47 (48%), Gaps = 1/47 (2%)
Frame = +1
Query: 361 QPKVCSRSWRNTGQKLRQ-SGKSVYRKPPKPRLLRKMSRQRKRPKPP 498
Q + + S R Q LR+ SG+ ++PP + + R+ P PP
Sbjct: 253 QDEEATASARRRAQSLRRASGREQPKQPPPRHHVSTLQRKESEPPPP 299
>02_01_0639 + 4791454-4792106,4792207-4792369,4792618-4793238
Length = 478
Score = 27.1 bits (57), Expect = 9.1
Identities = 11/22 (50%), Positives = 14/22 (63%)
Frame = +1
Query: 376 SRSWRNTGQKLRQSGKSVYRKP 441
SR W T QKLR GK ++ +P
Sbjct: 106 SRPWPPTVQKLRAQGKGIFFEP 127
>01_06_0776 + 31912953-31914086,31914195-31915073,31915160-31915198
Length = 683
Score = 27.1 bits (57), Expect = 9.1
Identities = 15/52 (28%), Positives = 22/52 (42%)
Frame = +2
Query: 164 EDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASKGCVTASSQSA 319
ED + + E+ +L +W A S PF A P + V +SS A
Sbjct: 398 EDGRSKLTSESNQLTFWSDSQAGNGSSPFHHSAGGGMSPYYRDVVLSSSSKA 449
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,070,297
Number of Sequences: 37544
Number of extensions: 284924
Number of successful extensions: 970
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 941
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 969
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1142636160
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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