Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E05
(523 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal pro... 132 2e-31
AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical ... 124 3e-29
AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal pro... 121 3e-28
AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical ... 98 3e-21
AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein. 31 0.50
AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein. 31 0.50
AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cel... 31 0.50
AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cel... 31 0.50
U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical pr... 29 1.5
DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determini... 29 1.5
AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical... 29 2.7
AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nucl... 28 4.7
Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical pr... 27 6.2
U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine d... 27 6.2
AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical ... 27 6.2
AF003390-5|AAB54270.2| 873|Caenorhabditis elegans Hypothetical ... 27 8.1
AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical ... 27 8.1
>AC006729-4|AAK84600.1| 265|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform a protein.
Length = 265
Score = 132 bits (318), Expect = 2e-31
Identities = 62/114 (54%), Positives = 78/114 (68%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 360 TAKGLFKILEKYRPETEAVRKERLPXXXXXXXXXXDEPPT*KAKATLRAGTNTV 521
+A+ FK+L+KYRPE+ +K RL E T K T+R G NT+
Sbjct: 92 SARQAFKLLDKYRPESTEAKKNRLRARAEARAAGKKEEVT-KRPNTVRHGVNTI 144
>AC084159-4|AAK39366.1| 234|Caenorhabditis elegans Hypothetical
protein Y73B3A.18a protein.
Length = 234
Score = 124 bits (300), Expect = 3e-29
Identities = 54/84 (64%), Positives = 68/84 (80%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSH 194
Query: 360 TAKGLFKILEKYRPETEAVRKERL 431
+A+ FK+L+KYRPE+ +K RL
Sbjct: 195 SARQAFKLLDKYRPESSEAKKNRL 218
>AC006729-3|AAM15612.1| 245|Caenorhabditis elegans Ribosomal
protein, large subunitprotein 7A, isoform c protein.
Length = 245
Score = 121 bits (292), Expect = 3e-28
Identities = 53/81 (65%), Positives = 66/81 (81%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLDKT 359
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 32 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALDSQ 91
Query: 360 TAKGLFKILEKYRPETEAVRK 422
+A+ FK+L+KYRPE+ V K
Sbjct: 92 SARQAFKLLDKYRPESTEVTK 112
>AC084159-5|AAM69075.1| 199|Caenorhabditis elegans Hypothetical
protein Y73B3A.18b protein.
Length = 199
Score = 98.3 bits (234), Expect = 3e-21
Identities = 42/58 (72%), Positives = 50/58 (86%)
Frame = +3
Query: 180 LFEKRTKNFAIGQDIQPTRDLSRFVRWPKYIRIQRQKAVLQRRLKVPPPINQFTQTLD 353
LFEKR +NF IGQDIQP +D++RFV+WPKYIR+QRQ A+LQ+RLKVPP INQF LD
Sbjct: 135 LFEKRARNFNIGQDIQPKKDVTRFVKWPKYIRLQRQSAILQKRLKVPPTINQFRTALD 192
>AY818713-1|AAX35669.1| 691|Caenorhabditis elegans LIN-65S protein.
Length = 691
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 110 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 289
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 31 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 88
Query: 290 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 385
G AS+Q++ A+ P++ + + QD+
Sbjct: 89 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 120
>AY818712-1|AAX35668.1| 728|Caenorhabditis elegans LIN-65L protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 110 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 289
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 290 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 385
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-22|AAN73851.2| 512|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform b protein.
Length = 512
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 110 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 289
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 290 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 385
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>AC025726-21|AAK73935.3| 728|Caenorhabditis elegans Abnormal cell
lineage protein 65,isoform a protein.
Length = 728
Score = 31.1 bits (67), Expect = 0.50
Identities = 22/92 (23%), Positives = 39/92 (42%)
Frame = +2
Query: 110 DREKSSGRSTCGEES*AQEDCKPSIREENKELCYWPGHPANQRSIPFRAMAEIYSHPASK 289
D ++ +T G ES QE+ P A++ S P + E+ P S
Sbjct: 68 DMDEDEDVTTDGPES--QEELAADAPAPGAPEASAPAQEASEASAPDQEAPEVQDVPDSS 125
Query: 290 GCVTASSQSAAANQPVHPDIR*NHSQRSVQDL 385
G AS+Q++ A+ P++ + + QD+
Sbjct: 126 GAPDASAQASEASDASAPEVPGSTEAQDAQDV 157
>U39850-2|AAA81056.1| 451|Caenorhabditis elegans Hypothetical
protein F52C9.7 protein.
Length = 451
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +1
Query: 310 SKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSRQRKR 486
SK R+S PR + +P SRS + ++LR+ +S R +P RKMSR R R
Sbjct: 204 SKSPRRSREDPRK-VARKP---SRSRSRSAERLRRKSRSPRRSREEP---RKMSRSRSR 255
>DQ641631-1|ABG29106.1| 451|Caenorhabditis elegans sex determining
protein MOG-3 protein.
Length = 451
Score = 29.5 bits (63), Expect = 1.5
Identities = 22/59 (37%), Positives = 31/59 (52%)
Frame = +1
Query: 310 SKCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSRQRKR 486
SK R+S PR + +P SRS + ++LR+ +S R +P RKMSR R R
Sbjct: 204 SKSPRRSREDPRK-VARKP---SRSRSRSAERLRRKSRSPRRSREEP---RKMSRSRSR 255
>AC084154-11|AAK29874.1| 350|Caenorhabditis elegans Hypothetical
protein Y22D7AR.1 protein.
Length = 350
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/70 (28%), Positives = 30/70 (42%), Gaps = 1/70 (1%)
Frame = +1
Query: 313 KCRRQSTSSPRH*IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRK-MSRQRKRP 489
K + +S P+ +KP+PK + N +L+ K PKP K R + P
Sbjct: 256 KTKLKSEPKPKPKLKPKPKPNPKPEPNPMPELKPKPKHKPNSRPKPNPRPKPKPRSKPNP 315
Query: 490 KPPYALEPTL 519
KP +P L
Sbjct: 316 KPKPRPKPEL 325
>AC006834-1|AAF40010.3| 8545|Caenorhabditis elegans Abnormal nuclear
anchorage protein1 protein.
Length = 8545
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKER 428
KT AK L + LEK P+ +A+R+E+
Sbjct: 3250 KTKAKELLQALEKAIPQEDAIRREQ 3274
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKER 428
KT AK L + LEK P+ +A+R+E+
Sbjct: 4153 KTKAKELLQALEKAIPQEDAIRREQ 4177
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKER 428
KT AK L + LEK P+ +A+R+E+
Sbjct: 5107 KTKAKELLQALEKAIPQEDAIRREQ 5131
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKER 428
KT AK L + LEK P+ +A+R+E+
Sbjct: 6010 KTKAKELLQALEKAIPQEDAIRREQ 6034
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKER 428
KT AK L + LEK P+ +A+R+E+
Sbjct: 6913 KTKAKELLQALEKAIPQEDAIRREQ 6937
Score = 27.9 bits (59), Expect = 4.7
Identities = 12/25 (48%), Positives = 18/25 (72%)
Frame = +3
Query: 354 KTTAKGLFKILEKYRPETEAVRKER 428
KT AK L + LEK P+ +A+R+E+
Sbjct: 7816 KTKAKELLQALEKAIPQEDAIRREQ 7840
>Z74476-5|CAA98965.1| 325|Caenorhabditis elegans Hypothetical
protein W05B10.5 protein.
Length = 325
Score = 27.5 bits (58), Expect = 6.2
Identities = 13/26 (50%), Positives = 16/26 (61%), Gaps = 2/26 (7%)
Frame = -1
Query: 235 LVGWMSWPIAKF--FVLFSNRGFTIF 164
LVGW +W I F +L SNR F +F
Sbjct: 97 LVGWFAWCIGPFSQVLLTSNRIFAVF 122
>U37429-12|AAA79353.1| 274|Caenorhabditis elegans Alkylguanine dna
alkyltransferaseprotein 2 protein.
Length = 274
Score = 27.5 bits (58), Expect = 6.2
Identities = 12/48 (25%), Positives = 26/48 (54%)
Frame = +1
Query: 352 IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSRQRKRPKP 495
+K PK+C+++ + S + PPK +++K+ + ++ PKP
Sbjct: 180 MKQSPKICAKT-------VSCPSTSEVKSPPKKMIIQKIQKHQEAPKP 220
>AF026212-3|AAF99974.2| 1172|Caenorhabditis elegans Hypothetical
protein F52G3.1 protein.
Length = 1172
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/47 (34%), Positives = 23/47 (48%)
Frame = +1
Query: 352 IKPQPKVCSRSWRNTGQKLRQSGKSVYRKPPKPRLLRKMSRQRKRPK 492
IKP P V + + Q+ + S KPPK + LRK + K+ K
Sbjct: 328 IKP-PTVAKQDREKSVQEAKTSHPPAPVKPPKEKKLRKEGKSSKKEK 373
>AF003390-5|AAB54270.2| 873|Caenorhabditis elegans Hypothetical
protein R155.4 protein.
Length = 873
Score = 27.1 bits (57), Expect = 8.1
Identities = 11/35 (31%), Positives = 16/35 (45%)
Frame = +1
Query: 385 WRNTGQKLRQSGKSVYRKPPKPRLLRKMSRQRKRP 489
WR Q+ R + +R P P R S+ + RP
Sbjct: 820 WRRRSQRRRAAEAFAHRNDPTPESRRSQSKNQLRP 854
>AC024744-1|AAL00859.1| 685|Caenorhabditis elegans Hypothetical
protein Y108G3AL.3 protein.
Length = 685
Score = 27.1 bits (57), Expect = 8.1
Identities = 19/57 (33%), Positives = 28/57 (49%), Gaps = 3/57 (5%)
Frame = +3
Query: 264 KYIRIQRQKAVLQR---RLKVPPPINQFTQTLDKTTAKGLFKILEKYRPETEAVRKE 425
+Y+R QR K + + R+K I Q TA +IL+K + E A+RKE
Sbjct: 615 QYLREQRDKLLQMKNAERIKQMTDIQQNASLERPKTAARAREILDKDKKEAVAIRKE 671
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,384,054
Number of Sequences: 27780
Number of extensions: 223827
Number of successful extensions: 656
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 613
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 656
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1017709248
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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