Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E03
         (524 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual    30   0.24 
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    27   2.3  
SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces pom...    26   3.0  
SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity fac...    25   5.2  
SPBC16D10.04c |dna2||DNA replication endonuclease-helicase Dna2|...    25   9.1  
SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex ...    25   9.1  

>SPCC5E4.04 |cut1||separase|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 1828

 Score = 29.9 bits (64), Expect = 0.24
 Identities = 20/50 (40%), Positives = 28/50 (56%)
 Frame = +1

Query: 307 SPSQLTTAIRTRTIPQVSCCYVKLLLEK*KSVTTRRT*SFLRECIQLGVS 456
           +PS+L TA R      + CC    +LE+   V T+ T S L +CI+ GVS
Sbjct: 93  TPSRLNTAHRPEVFYLLECC--TYILEQ-MQVVTKNT-SHLYDCIRSGVS 138


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 26.6 bits (56), Expect = 2.3
 Identities = 13/40 (32%), Positives = 19/40 (47%)
 Frame = -3

Query: 516 EALEVHRRGPGS*RGQEPCARHPKLNAFPEEASRSPRGDR 397
           E  E +R G      ++P      L++ PEE SR P  D+
Sbjct: 689 ERSENYRLGATPLTAEKPFTTEKPLSSLPEEVSRQPTDDK 728


>SPAC25B8.05 |||pseudouridylate synthase |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 450

 Score = 26.2 bits (55), Expect = 3.0
 Identities = 14/41 (34%), Positives = 20/41 (48%), Gaps = 1/41 (2%)
 Frame = +3

Query: 237 RIAPPEAPVTGYMFGKGIYFADMVSKSANYCYT-NKNYPTG 356
           R+ P +  +TGY F    + A    K  +Y Y   K+YP G
Sbjct: 179 RLLPADIRITGYAFPPEGFDARFSCKQRHYKYLFTKDYPGG 219


>SPAC22G7.10 |||mRNA cleavage and polyadenylation specificity factor
           complex subunit, Fip1 homolog |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 344

 Score = 25.4 bits (53), Expect = 5.2
 Identities = 9/25 (36%), Positives = 14/25 (56%)
 Frame = -3

Query: 465 PCARHPKLNAFPEEASRSPRGDRFS 391
           P + HP  + +P  + R P  DR+S
Sbjct: 304 PPSNHPHSSNYPSSSRRKPSPDRYS 328


>SPBC16D10.04c |dna2||DNA replication endonuclease-helicase
            Dna2|Schizosaccharomyces pombe|chr 2|||Manual
          Length = 1398

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 19/61 (31%), Positives = 27/61 (44%)
 Frame = +3

Query: 312  KSANYCYTNKNYPTGLMLLCEVALGEMKICHHAENVKLPPGMHSAWGVGRTAPDPAMNRV 491
            K   +C +    P  L  L E  +  +K CH AE+  L  GM    G G+T    ++ R 
Sbjct: 915  KPPKFCNSALIDPEFLKCLNEDQITALKKCHAAEHYSLILGMP---GTGKTTTISSLIRS 971

Query: 492  L 494
            L
Sbjct: 972  L 972


>SPAC3H1.01c |orp3|orc3, SPAP14E8.06c|origin recognition complex
           subunit Orp3 |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 690

 Score = 24.6 bits (51), Expect = 9.1
 Identities = 10/27 (37%), Positives = 12/27 (44%)
 Frame = -3

Query: 312 WRPYPQSKSLCQTCTRSRALPEELCAD 232
           W   PQ KS+CQ   R  +     C D
Sbjct: 404 WLSSPQYKSICQAILRMNSTKALACLD 430


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,256,502
Number of Sequences: 5004
Number of extensions: 47447
Number of successful extensions: 135
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 133
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 135
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 214353836
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)