Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E03
(524 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
01_03_0232 + 14030821-14030904,14031029-14031374,14031475-140315... 219 1e-57
01_03_0231 + 14014243-14014390,14015053-14015141,14017859-140179... 200 6e-52
07_03_0061 + 12972944-12973054,12974509-12974536,12974701-129748... 144 4e-35
02_04_0080 - 19529575-19529643,19529756-19529938,19530061-195302... 76 2e-14
02_05_0685 + 30891289-30891810,30892740-30892915,30893379-308934... 31 0.57
03_02_0259 - 6920472-6920579,6920744-6921022,6921115-6921390,692... 29 1.7
02_01_0369 + 2649178-2655291,2655773-2656601,2656737-2657425,265... 29 1.7
03_02_0260 - 6924532-6924757,6925443-6925546,6925729-6926007,692... 29 2.3
09_01_0124 + 1868530-1868898 29 3.0
06_03_0178 + 17594062-17595576 29 3.0
06_01_0456 - 3249662-3249710,3249838-3250451,3250694-3250780,325... 29 3.0
02_03_0116 - 15440263-15441024,15441097-15443451 28 5.3
11_01_0274 - 2050667-2052115 27 9.2
10_08_1042 - 22515298-22515354,22515614-22515709,22515806-225159... 27 9.2
>01_03_0232 +
14030821-14030904,14031029-14031374,14031475-14031599,
14031927-14032023,14032459-14032691,14032765-14032885,
14033319-14033374,14033630-14033703,14034193-14034239,
14034458-14034507,14034860-14034922,14035160-14035240,
14035517-14035627,14035714-14035789,14036216-14036358,
14036775-14036848,14037304-14037409,14037492-14037547,
14038272-14038378,14041150-14041598
Length = 832
Score = 219 bits (534), Expect = 1e-57
Identities = 102/172 (59%), Positives = 132/172 (76%), Gaps = 2/172 (1%)
Frame = +3
Query: 12 PLSKATDEFSMIEEYVRNTHAATHSSYTLDLEQVFKVVREGEDKRYKPFRKLHNRRLLWH 191
PL ++E+SMI+ Y+ NTH TH+SYT+D+ Q+FKV R GE +R++ F NR LLWH
Sbjct: 449 PLEVGSEEYSMIKTYLANTHGKTHTSYTVDVVQIFKVSRHGEMERFQKFATAGNRMLLWH 508
Query: 192 GSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCYTNKNYPTGLMLLC 371
GSR+TN+AGI+SQGLRIAPPEAPVTGYMFGKG+YFADM SKSANYCY ++ +G++LLC
Sbjct: 509 GSRLTNWAGILSQGLRIAPPEAPVTGYMFGKGVYFADMFSKSANYCYASEACRSGVLLLC 568
Query: 372 EVALGEMKICHHA--ENVKLPPGMHSAWGVGRTAPDPAMNRVLDDGLLVPLG 521
EVALGEM +A + LP G S GVG+T P+ A +++ DDG++VPLG
Sbjct: 569 EVALGEMNELLNADYDANNLPKGKLSTKGVGQTEPNTAESKITDDGVVVPLG 620
>01_03_0231 +
14014243-14014390,14015053-14015141,14017859-14017949,
14018088-14018215,14018703-14018784,14019022-14019081,
14019160-14019251,14019342-14019462,14019873-14019928,
14020193-14020272,14020774-14020820,14020940-14020989,
14021304-14021366,14021515-14021595,14021703-14021717,
14021875-14021985,14022072-14022147,14022350-14022492,
14022721-14022794,14023364-14023454,14023589-14023687
Length = 598
Score = 200 bits (488), Expect = 6e-52
Identities = 96/177 (54%), Positives = 128/177 (72%), Gaps = 7/177 (3%)
Frame = +3
Query: 12 PLSKATDEFSMIEE-----YVRNTHAATHSSYTLDLEQVFKVVREGEDKRYKPFRKLHNR 176
PL ++E+SM E Y+ NTH TH+ YT+D+ Q+FKV R GE +R++ F NR
Sbjct: 386 PLEVDSEEYSMARERKIKTYLTNTHGKTHTGYTVDIVQIFKVSRLGEMERFQKFASAGNR 445
Query: 177 RLLWHGSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCYTNKNYPTG 356
LLWHGSR+TN+AGI+SQGLRIAPPEAP++G+MFGKG+YFADM SKSANYC ++ +G
Sbjct: 446 MLLWHGSRLTNWAGILSQGLRIAPPEAPISGFMFGKGVYFADMFSKSANYCCASEACKSG 505
Query: 357 LMLLCEVALGEMKICHHAE--NVKLPPGMHSAWGVGRTAPDPAMNRVLDDGLLVPLG 521
+MLLCEVALGEM + + LP G S GVG+T P+ A +++ DDG+++PLG
Sbjct: 506 VMLLCEVALGEMNELLYGDFGADNLPNGKLSTKGVGQTEPNIAESKITDDGMVIPLG 562
>07_03_0061 + 12972944-12973054,12974509-12974536,12974701-12974870,
12975878-12976043,12976122-12976425,12977155-12977350,
12977464-12977622,12978311-12978371,12978904-12978967,
12979099-12979346,12980039-12980250,12980344-12980456,
12980547-12980623,12980710-12980873,12981493-12981564,
12981565-12981760,12981813-12981854,12982358-12982440,
12982534-12982671,12982942-12983124,12983216-12983263
Length = 944
Score = 144 bits (349), Expect = 4e-35
Identities = 78/171 (45%), Positives = 105/171 (61%), Gaps = 1/171 (0%)
Frame = +3
Query: 12 PLSKATDEFSMIEEYVRNTHAATHSSYTLDLEQVFKVVREGEDKRYKPFRKLHNRRLLWH 191
PL +++ ++E+Y+ NTHA TH +Y+ ++ + V
Sbjct: 755 PLPHDCEDYKLVEKYLLNTHAPTHKAYST-IQTIVSV-------------------FFCI 794
Query: 192 GSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCYTNKNYPTGLMLLC 371
GSR+TN+ GI+SQGLRIAPPEAPVTGYMFGKG+YFAD+VSKSA YCY ++ P GLMLL
Sbjct: 795 GSRLTNYVGILSQGLRIAPPEAPVTGYMFGKGLYFADLVSKSAQYCYVDRKNPVGLMLLS 854
Query: 372 EVALGEMKICHHAENVKLPP-GMHSAWGVGRTAPDPAMNRVLDDGLLVPLG 521
EVALG+M A ++ PP G HS G+G+T P + D ++VP G
Sbjct: 855 EVALGDMYELKKATSMDKPPRGKHSTKGLGKTVPLESEFAKWRDDVVVPCG 905
>02_04_0080 - 19529575-19529643,19529756-19529938,19530061-19530210,
19530297-19530379,19530497-19530599,19530709-19530918,
19531023-19531183,19531275-19531351,19531483-19531610,
19531695-19531935,19532047-19532180,19532261-19532435,
19532587-19532656,19532746-19532803,19532887-19532994,
19533088-19533283,19533381-19533727,19534008-19534034,
19534334-19534336
Length = 840
Score = 76.2 bits (179), Expect = 2e-14
Identities = 52/173 (30%), Positives = 85/173 (49%), Gaps = 8/173 (4%)
Frame = +3
Query: 27 TDEFSMIEEYVRNTHAATHSS---YTLDLEQVFKVVREGEDKRYKPFRKLHNRRLLWHGS 197
++++ MI +Y+ T+ Y+ +E+++ V Y +KL N+ LLW G+
Sbjct: 623 SEDYKMILKYLEKTYEPVKVGDVVYSATVERIY-AVESSALPSYDEIKKLPNKVLLWCGT 681
Query: 198 RVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCYTNKNYPTGLMLLCEV 377
R +N + G A PV GYMFGK I +D +++A Y +T + P G ++L
Sbjct: 682 RSSNLLRHLRDGFVPAVCHIPVPGYMFGKAIVCSDAAAEAALYGFTAVDRPEGYLVLAVA 741
Query: 378 ALG----EMKICHHAENVK-LPPGMHSAWGVGRTAPDPAMNRVLDDGLLVPLG 521
+LG E+ +E+VK + GVGR DP+ + DG+ VP G
Sbjct: 742 SLGKEIQEITGTPGSEDVKRMEEKKMGVKGVGRKTTDPSEHFTWRDGVTVPCG 794
>02_05_0685 + 30891289-30891810,30892740-30892915,30893379-30893492,
30893846-30893954,30894038-30894124,30895137-30895736,
30895823-30896101,30896808-30896897,30897151-30897507,
30897924-30898160,30898733-30898953,30899856-30899955,
30900042-30900188,30900287-30900385
Length = 1045
Score = 31.1 bits (67), Expect = 0.57
Identities = 25/95 (26%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Frame = +3
Query: 255 APVTGYMFGKGIYFADMVSKSANYCYTNKNYPTGLMLLCEVALGEMKICHHAENVKLP-- 428
A + G + +GI K+++Y Y + TG++ E + +VK+P
Sbjct: 911 AAICGSLVSEGIKLRPW--KNSSYVYEPSSVVTGVINYLEEQRNSLVDLQEKHSVKIPCE 968
Query: 429 -----PGMHSAWGVGRTAPDPAMNRVLDDGLLVPL 518
GM AW G T + M+ +DDG L L
Sbjct: 969 IDAQFAGMVEAWASGLTWREIMMDSAMDDGDLARL 1003
>03_02_0259 -
6920472-6920579,6920744-6921022,6921115-6921390,
6921473-6921691,6921795-6921963,6922248-6922422,
6922490-6922601,6923343-6923573
Length = 522
Score = 29.5 bits (63), Expect = 1.7
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Frame = -2
Query: 172 LCNFLNGLYRLSSPSRTTLNT----------CSRSSV*EECVAACV-FLTYSSIIENSSV 26
LC +L Y L P +T+NT S E AC +L+ + N +
Sbjct: 382 LCKYLESFYTLRKPVASTINTLAGALYKVFCASTDQAKNEMREACFDYLSLGGVFSNGPI 441
Query: 25 ALLSG 11
ALLSG
Sbjct: 442 ALLSG 446
>02_01_0369 +
2649178-2655291,2655773-2656601,2656737-2657425,
2657523-2657649,2657731-2657812,2658172-2658196
Length = 2621
Score = 29.5 bits (63), Expect = 1.7
Identities = 15/40 (37%), Positives = 18/40 (45%)
Frame = +2
Query: 374 SCSWRNENLSPRGEREASSGNAFSLGCRAHGS*PRYEPGP 493
SC N ++ P E GNA +G HGS PGP
Sbjct: 118 SCDVDNADVLPVQEGGDGGGNAQDVGVSEHGSLEHVNPGP 157
>03_02_0260 -
6924532-6924757,6925443-6925546,6925729-6926007,
6926093-6926368,6926460-6926678,6926758-6926926,
6927208-6927382,6927489-6927600,6929566-6929820
Length = 604
Score = 29.1 bits (62), Expect = 2.3
Identities = 20/65 (30%), Positives = 27/65 (41%), Gaps = 11/65 (16%)
Frame = -2
Query: 172 LCNFLNGLYRLSSPSRTTLNT----------CSRSSV*EECVAACV-FLTYSSIIENSSV 26
LC +L Y L P +T+NT S E AC +L+ + N +
Sbjct: 390 LCKYLESFYTLRKPVASTINTLAGALYKVFSASPDQARNEMRQACFDYLSLGGVFSNGPI 449
Query: 25 ALLSG 11
ALLSG
Sbjct: 450 ALLSG 454
>09_01_0124 + 1868530-1868898
Length = 122
Score = 28.7 bits (61), Expect = 3.0
Identities = 20/65 (30%), Positives = 30/65 (46%), Gaps = 4/65 (6%)
Frame = +3
Query: 165 LHNRRLLWH----GSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCY 332
L +RRL W +R G + R+APPE+P G G + + + N +
Sbjct: 11 LGSRRLCWPLAQAAARQRKGRGRAAAAARVAPPESPDAGGDAGDSLNCQGLKLRLPN--F 68
Query: 333 TNKNY 347
+NKNY
Sbjct: 69 SNKNY 73
>06_03_0178 + 17594062-17595576
Length = 504
Score = 28.7 bits (61), Expect = 3.0
Identities = 22/59 (37%), Positives = 27/59 (45%)
Frame = -2
Query: 286 PLPNMYPVTGASGGAMRRPCEMMPAKLVTREPCQSSRLLCNFLNGLYRLSSPSRTTLNT 110
PLP+ PV G G A R K V +SSR + L YR ++PS TT T
Sbjct: 427 PLPS--PVRG--GSASPRTFSPAAQKFVRNAIAKSSRTIDESLRASYRGTTPSATTPKT 481
>06_01_0456 -
3249662-3249710,3249838-3250451,3250694-3250780,
3251509-3252384,3252445-3252534,3252645-3252696,
3253117-3253168,3253265-3253363,3253444-3253528,
3253620-3253668,3253749-3253816,3254417-3254482,
3255690-3255741,3256685-3256767,3256915-3256946,
3257271-3257466,3258542-3258607,3259797-3259869,
3260010-3260224
Length = 967
Score = 28.7 bits (61), Expect = 3.0
Identities = 18/58 (31%), Positives = 32/58 (55%), Gaps = 1/58 (1%)
Frame = +3
Query: 129 EGEDKRYKPFRKLHNRRLLWHGSRV-TNFAGIISQGLRIAPPEAPVTGYMFGKGIYFA 299
+G++++ + ++ RRL+ G R+ T+F G G + PP+ Y F +GI FA
Sbjct: 22 QGKEQQQQMAVAMNARRLVMIGDRLRTHFRG--GGGTVLEPPDLAHLVYAFARGIDFA 77
>02_03_0116 - 15440263-15441024,15441097-15443451
Length = 1038
Score = 27.9 bits (59), Expect = 5.3
Identities = 19/50 (38%), Positives = 26/50 (52%), Gaps = 1/50 (2%)
Frame = +3
Query: 123 VREGEDKRYKPFRKLHNRRLLWHGSRVTNFAGI-ISQGLRIAPPEAPVTG 269
VREG D R R+ ++RR H S T+ +G + G PP +PV G
Sbjct: 170 VREGPDARLNIERRRNDRRAA-HASEGTSSSGAPLRSGHGGQPPVSPVGG 218
>11_01_0274 - 2050667-2052115
Length = 482
Score = 27.1 bits (57), Expect = 9.2
Identities = 9/17 (52%), Positives = 15/17 (88%)
Frame = +2
Query: 239 HSSSGSARDRVHVWQRD 289
H +GSA++R+H++QRD
Sbjct: 263 HLVAGSAKERIHMFQRD 279
>10_08_1042 -
22515298-22515354,22515614-22515709,22515806-22515988,
22516277-22516365,22516481-22516722,22517008-22518116
Length = 591
Score = 27.1 bits (57), Expect = 9.2
Identities = 11/32 (34%), Positives = 16/32 (50%)
Frame = +3
Query: 360 MLLCEVALGEMKICHHAENVKLPPGMHSAWGV 455
M+LC V +G ++I HH P + GV
Sbjct: 384 MMLCRVVMGNVEIVHHGSKQHRPSNEYFDSGV 415
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,819,533
Number of Sequences: 37544
Number of extensions: 355493
Number of successful extensions: 958
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 934
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 954
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1154538620
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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