Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E03
(524 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribo... 164 4e-41
AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-rib... 164 4e-41
AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribo... 76 1e-14
AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribo... 76 1e-14
AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribo... 76 1e-14
Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical pr... 69 2e-12
AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribo... 69 2e-12
Z92804-3|CAB07250.1| 492|Caenorhabditis elegans Hypothetical pr... 29 2.0
AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical ... 28 3.6
U80030-3|AAG24160.2| 367|Caenorhabditis elegans Serpentine rece... 27 6.2
AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical ... 27 8.2
>AF499444-1|AAM27195.1| 945|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-1 protein.
Length = 945
Score = 164 bits (398), Expect = 4e-41
Identities = 84/173 (48%), Positives = 111/173 (64%), Gaps = 3/173 (1%)
Frame = +3
Query: 12 PLSKATDEFSMIEEYVRNTHAATHSSYTLDLEQVFKVVREGEDKRYKPFRKLHNRRLLWH 191
PL + D+++MI +Y++NTH ATH ++L + K+ R+ E ++K R + NRRLLWH
Sbjct: 732 PLQQGCDDWNMIHQYLKNTHGATHD-LKVELIDILKLNRDNESSKFK--RHIGNRRLLWH 788
Query: 192 GSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCYTNKNYPTGLMLLC 371
GS NFAGI+ QGLRIAPPEAPV+GYMFGKG+YFADM SKS YC N +LLC
Sbjct: 789 GSGKMNFAGILGQGLRIAPPEAPVSGYMFGKGVYFADMFSKSFFYCRANAK-EEAYLLLC 847
Query: 372 EVALGEMKICHHAENVK---LPPGMHSAWGVGRTAPDPAMNRVLDDGLLVPLG 521
+VALG ++ ++NV LP G S G+GR P + DG +PLG
Sbjct: 848 DVALGNVQQLMASKNVSRQTLPAGFQSVQGLGRQCPREIGSYNHPDGYTIPLG 900
>AC024200-15|AAF36011.1| 945|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 1 protein.
Length = 945
Score = 164 bits (398), Expect = 4e-41
Identities = 84/173 (48%), Positives = 111/173 (64%), Gaps = 3/173 (1%)
Frame = +3
Query: 12 PLSKATDEFSMIEEYVRNTHAATHSSYTLDLEQVFKVVREGEDKRYKPFRKLHNRRLLWH 191
PL + D+++MI +Y++NTH ATH ++L + K+ R+ E ++K R + NRRLLWH
Sbjct: 732 PLQQGCDDWNMIHQYLKNTHGATHD-LKVELIDILKLNRDNESSKFK--RHIGNRRLLWH 788
Query: 192 GSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCYTNKNYPTGLMLLC 371
GS NFAGI+ QGLRIAPPEAPV+GYMFGKG+YFADM SKS YC N +LLC
Sbjct: 789 GSGKMNFAGILGQGLRIAPPEAPVSGYMFGKGVYFADMFSKSFFYCRANAK-EEAYLLLC 847
Query: 372 EVALGEMKICHHAENVK---LPPGMHSAWGVGRTAPDPAMNRVLDDGLLVPLG 521
+VALG ++ ++NV LP G S G+GR P + DG +PLG
Sbjct: 848 DVALGNVQQLMASKNVSRQTLPAGFQSVQGLGRQCPREIGSYNHPDGYTIPLG 900
>AF548287-1|AAN40683.1| 2238|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-5 protein.
Length = 2238
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +3
Query: 141 KRYKPFRKLHNRRLLWHGSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSA 320
++++PF N++ LWHG++ TN I+ G I PP A G +FG GIY AD KS
Sbjct: 2069 EKFEPFVNDDNQKFLWHGTKATNLMSILKNGFLIDPPSACKNGNLFGSGIYLADSFEKST 2128
Query: 321 NYCYTNKNYPTGLMLLCEVALGEMK 395
+YC + ML+C+ ALG+++
Sbjct: 2129 HYCQPSAG-GINYMLVCQTALGKVR 2152
>AF047664-2|AAC04454.2| 2276|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform a protein.
Length = 2276
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +3
Query: 141 KRYKPFRKLHNRRLLWHGSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSA 320
++++PF N++ LWHG++ TN I+ G I PP A G +FG GIY AD KS
Sbjct: 2107 EKFEPFVNDDNQKFLWHGTKATNLMSILKNGFLIDPPSACKNGNLFGSGIYLADSFEKST 2166
Query: 321 NYCYTNKNYPTGLMLLCEVALGEMK 395
+YC + ML+C+ ALG+++
Sbjct: 2167 HYCQPSAG-GINYMLVCQTALGKVR 2190
>AF047664-1|AAO12392.1| 2238|Caenorhabditis elegans Poly(adp-ribose)
metabolism enzymeprotein 5, isoform b protein.
Length = 2238
Score = 76.2 bits (179), Expect = 1e-14
Identities = 33/85 (38%), Positives = 50/85 (58%)
Frame = +3
Query: 141 KRYKPFRKLHNRRLLWHGSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSA 320
++++PF N++ LWHG++ TN I+ G I PP A G +FG GIY AD KS
Sbjct: 2069 EKFEPFVNDDNQKFLWHGTKATNLMSILKNGFLIDPPSACKNGNLFGSGIYLADSFEKST 2128
Query: 321 NYCYTNKNYPTGLMLLCEVALGEMK 395
+YC + ML+C+ ALG+++
Sbjct: 2129 HYCQPSAG-GINYMLVCQTALGKVR 2152
>Z47075-6|CAA87379.1| 538|Caenorhabditis elegans Hypothetical
protein E02H1.4 protein.
Length = 538
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/80 (43%), Positives = 47/80 (58%)
Frame = +3
Query: 174 RRLLWHGSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCYTNKNYPT 353
+RLLWHG+RVTN I+ GL+ P G MFG G+YFA++ +KSANYC +
Sbjct: 381 KRLLWHGTRVTNVFSILMNGLQF--PVGDRCGLMFGNGVYFANVPTKSANYCCPEASKRV 438
Query: 354 GLMLLCEVALGEMKICHHAE 413
MLLCEV + + +E
Sbjct: 439 -FMLLCEVETANPLVLYESE 457
>AF500111-1|AAM27196.1| 538|Caenorhabditis elegans poly ADP-ribose
metabolism enzyme-2 protein.
Length = 538
Score = 69.3 bits (162), Expect = 2e-12
Identities = 35/80 (43%), Positives = 47/80 (58%)
Frame = +3
Query: 174 RRLLWHGSRVTNFAGIISQGLRIAPPEAPVTGYMFGKGIYFADMVSKSANYCYTNKNYPT 353
+RLLWHG+RVTN I+ GL+ P G MFG G+YFA++ +KSANYC +
Sbjct: 381 KRLLWHGTRVTNVFSILMNGLQF--PVGDRCGLMFGNGVYFANVPTKSANYCCPEASKRV 438
Query: 354 GLMLLCEVALGEMKICHHAE 413
MLLCEV + + +E
Sbjct: 439 -FMLLCEVETANPLVLYESE 457
>Z92804-3|CAB07250.1| 492|Caenorhabditis elegans Hypothetical
protein K05D4.4 protein.
Length = 492
Score = 29.1 bits (62), Expect = 2.0
Identities = 13/40 (32%), Positives = 17/40 (42%)
Frame = -3
Query: 429 EEASRSPRGDRFSFLQEQLHIAT*DLWDXXXXXXXX*LTW 310
E+ R GD +F +QL+ DLW LTW
Sbjct: 271 EQKKREADGDHETFCNKQLYAMCFDLWMAGLQTTTVTLTW 310
>AF003148-5|AAB54209.3| 792|Caenorhabditis elegans Hypothetical
protein F32B5.7 protein.
Length = 792
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/36 (38%), Positives = 18/36 (50%)
Frame = +2
Query: 209 LCGHHLTRSAHSSSGSARDRVHVWQRDLLCGYGLQV 316
LC RS + S+ S + H W L CGYG Q+
Sbjct: 696 LCNPDKIRSRNDST-SVGHQAHKWPLTLACGYGRQL 730
>U80030-3|AAG24160.2| 367|Caenorhabditis elegans Serpentine
receptor, class w protein115 protein.
Length = 367
Score = 27.5 bits (58), Expect = 6.2
Identities = 16/54 (29%), Positives = 28/54 (51%)
Frame = -1
Query: 188 PK*SSVVQFPEWLVSFVLAFTHHFEYLFKVERVRGMRSCVRVPHILFYHRELIS 27
PK S+++ SF ++ EY F +E + G+ SC + PH +F +L +
Sbjct: 158 PKASAIIIAGICATSFPVSVLKFLEYQF-IE-IEGLESCAKGPHHIFAVSDLFT 209
>AF016654-1|AAB66028.1| 731|Caenorhabditis elegans Hypothetical
protein C17A2.5 protein.
Length = 731
Score = 27.1 bits (57), Expect = 8.2
Identities = 10/35 (28%), Positives = 20/35 (57%)
Frame = +3
Query: 54 YVRNTHAATHSSYTLDLEQVFKVVREGEDKRYKPF 158
Y+ ++H+ + D+E+ K++ E+ R KPF
Sbjct: 227 YILSSHSEKRAETVEDVEECSKLIEHEENSRDKPF 261
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,861,767
Number of Sequences: 27780
Number of extensions: 285678
Number of successful extensions: 774
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 731
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 766
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1028310386
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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