Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_E02
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm rec...    27   5.6  
U00031-7|AAK18870.2|  422|Caenorhabditis elegans Hypothetical pr...    27   7.4  

>AC006680-10|AAK72297.2|  335|Caenorhabditis elegans Seven tm
           receptor protein 41 protein.
          Length = 335

 Score = 27.5 bits (58), Expect = 5.6
 Identities = 12/31 (38%), Positives = 19/31 (61%)
 Frame = -2

Query: 419 RYFFRFYCIILSTYPC*IGIVNSYNVMFSTS 327
           ++F +F  I    YP   G+VNS +++F TS
Sbjct: 128 KWFQKFGVIFWILYPFLYGVVNSLSILFLTS 158


>U00031-7|AAK18870.2|  422|Caenorhabditis elegans Hypothetical
           protein B0361.7 protein.
          Length = 422

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 13/48 (27%), Positives = 23/48 (47%)
 Frame = +2

Query: 239 PYEVTEIGKPNITVSCNDQTCTTTKCDINGL*KTLHCNYLRYRFNRDM 382
           P  V  I KP       + +C T + ++N   K+   N +R +F R++
Sbjct: 132 PIPVHTISKPTDKELYEEASCPTAEIEMNAQWKSTKANGIRKKFAREL 179


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,828,034
Number of Sequences: 27780
Number of extensions: 254578
Number of successful extensions: 683
Number of sequences better than 10.0: 2
Number of HSP's better than 10.0 without gapping: 644
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 683
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)