Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_E01
(532 letters)
Database: celegans
27,780 sequences; 12,740,198 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical pr... 275 1e-74
Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical pr... 31 0.68
Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical pr... 29 2.7
AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical ... 28 3.6
AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like pro... 28 3.6
Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical p... 28 4.8
Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical pr... 28 4.8
Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical p... 27 8.4
Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical pr... 27 8.4
X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein. 27 8.4
>Z48334-1|CAA88308.1| 214|Caenorhabditis elegans Hypothetical
protein F10B5.1 protein.
Length = 214
Score = 275 bits (675), Expect = 1e-74
Identities = 127/165 (76%), Positives = 137/165 (83%)
Frame = +3
Query: 30 MGRRPARCYRYCKNKPYPKSRFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQL 209
MGRRPARCYRY KNKPYPKSRFCRGVPD KIRIFDLG KRA VD FP CVH++S+E E L
Sbjct: 1 MGRRPARCYRYIKNKPYPKSRFCRGVPDAKIRIFDLGNKRANVDTFPACVHMMSNEREHL 60
Query: 210 SSEALEAGRICCNKYLVKNCGKDQFHIRMRLHPFHVIRINKMLSCAGADRLQTGMRGAFG 389
SSEALEA RIC NKY+VKNCGKD FH+R+R HPFHV RINKMLSCAGADRLQTGMRGA+G
Sbjct: 61 SSEALEAARICANKYMVKNCGKDGFHLRVRKHPFHVTRINKMLSCAGADRLQTGMRGAYG 120
Query: 390 KPQGTVARVRIGQXIMSVRSSDRWKAQVIEALRRAKFKFPGRQKI 524
KPQG VARV IG + S+R + IEA RRAKFKFPGRQ I
Sbjct: 121 KPQGLVARVDIGDILFSMRIKEGNVKHAIEAFRRAKFKFPGRQII 165
>Z46791-1|CAA86761.1| 476|Caenorhabditis elegans Hypothetical
protein C09G5.2 protein.
Length = 476
Score = 30.7 bits (66), Expect = 0.68
Identities = 10/17 (58%), Positives = 14/17 (82%)
Frame = -1
Query: 394 GFPNAPRIPVWSLSAPA 344
GFPN+P +P+W LS P+
Sbjct: 232 GFPNSPLLPIWLLSYPS 248
>Z81055-1|CAB02889.1| 618|Caenorhabditis elegans Hypothetical
protein F01G10.1 protein.
Length = 618
Score = 28.7 bits (61), Expect = 2.7
Identities = 14/51 (27%), Positives = 23/51 (45%), Gaps = 2/51 (3%)
Frame = +3
Query: 375 RGAFGKPQGTVARVRIGQXIMSVRSSDRWKAQVIE--ALRRAKFKFPGRQK 521
R GKP +A+ G+ I + + D W + + + K +F G QK
Sbjct: 228 RSTKGKPTAIIAKTLKGKGIEGIENEDNWHGKPVPEGTVNAIKARFHGSQK 278
>AL021474-2|CAA16309.3| 655|Caenorhabditis elegans Hypothetical
protein Y32F6A.3 protein.
Length = 655
Score = 28.3 bits (60), Expect = 3.6
Identities = 16/37 (43%), Positives = 23/37 (62%), Gaps = 5/37 (13%)
Frame = +1
Query: 217 RRWKQAVSVATSTS-----*RTAVKISSTSG*DYTPS 312
RRWK+ V +AT+TS R+ V+ +STS TP+
Sbjct: 504 RRWKKVVPIATNTSVSSSTPRSVVRTTSTSSVPTTPT 540
>AF099919-10|AAC68792.1| 205|Caenorhabditis elegans Max-like
protein 2 protein.
Length = 205
Score = 28.3 bits (60), Expect = 3.6
Identities = 14/49 (28%), Positives = 26/49 (53%)
Frame = +3
Query: 90 RFCRGVPDPKIRIFDLGKKRATVDDFPLCVHLVSDEYEQLSSEALEAGR 236
R C + K I D K+ A ++ + +++ EYEQ++S +AG+
Sbjct: 93 RACDFMSQLKTDISDADKQLAQLNAQAAALEMIASEYEQMASSVPDAGQ 141
>Z66515-10|CAI70410.1| 510|Caenorhabditis elegans Hypothetical
protein R53.1b protein.
Length = 510
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 407 YCALGFPERTT-HPSLEPISSSARQHFIDA 321
Y +LG + T HP+L +SS R+H++ A
Sbjct: 465 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 494
>Z66515-9|CAA91346.1| 519|Caenorhabditis elegans Hypothetical
protein R53.1a protein.
Length = 519
Score = 27.9 bits (59), Expect = 4.8
Identities = 12/30 (40%), Positives = 19/30 (63%), Gaps = 1/30 (3%)
Frame = -3
Query: 407 YCALGFPERTT-HPSLEPISSSARQHFIDA 321
Y +LG + T HP+L +SS R+H++ A
Sbjct: 474 YTSLGGRDNTVKHPALRIVSSDGREHYLPA 503
>Z71266-12|CAA95848.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 410 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 309
R C GFP RT HP ++ + A + +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742
>Z71261-8|CAA95806.1| 1938|Caenorhabditis elegans Hypothetical
protein R06C7.10 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 410 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 309
R C GFP RT HP ++ + A + +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742
>X08065-1|CAA30854.1| 1938|Caenorhabditis elegans myosin 1 protein.
Length = 1938
Score = 27.1 bits (57), Expect = 8.4
Identities = 13/35 (37%), Positives = 19/35 (54%), Gaps = 1/35 (2%)
Frame = -3
Query: 410 RYCALGFPERTTHPS-LEPISSSARQHFIDADDME 309
R C GFP RT HP ++ + A + +DDM+
Sbjct: 708 RICRKGFPNRTQHPDFVQRYAILAAKEAKSSDDMK 742
Database: celegans
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 12,740,198
Number of sequences in database: 27,780
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,129,017
Number of Sequences: 27780
Number of extensions: 288055
Number of successful extensions: 763
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 725
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 763
length of database: 12,740,198
effective HSP length: 77
effective length of database: 10,601,138
effective search space used: 1049512662
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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