Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D24
         (536 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0353 - 24338717-24338946,24339046-24339134,24339421-243395...    36   0.020
09_04_0242 + 15969091-15969128,15970172-15970409,15971439-159716...    31   0.44 
06_01_1188 + 10219546-10219664,10220855-10223660                       29   1.8  
02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552     28   4.1  
09_06_0269 - 21947847-21947904,21947988-21948169,21948268-219489...    27   7.2  

>05_05_0353 -
           24338717-24338946,24339046-24339134,24339421-24339500,
           24339768-24339902,24340231-24340461,24340540-24340634,
           24340734-24340819,24341467-24341570,24341674-24341805,
           24341883-24341999,24342170-24342229,24342779-24342820,
           24342878-24342952,24343127-24343177,24343256-24343436,
           24343548-24343594,24343710-24343775
          Length = 606

 Score = 35.9 bits (79), Expect = 0.020
 Identities = 25/93 (26%), Positives = 39/93 (41%)
 Frame = +1

Query: 169 LIQASCCVQSGFSGGPILRITXXXXXXXXXXXXXNAKTQLGAYYPYVNMSIPVRVFKQVL 348
           L Q +  V  G SGG +L                NAK   G+  P++N SIP +  + V 
Sbjct: 472 LDQTTAAVHPGASGGVLL----DSLGRMVGLITSNAKHGGGSTIPHLNFSIPCKSLEMVF 527

Query: 349 HQFILDKDITRLRVIDNDKDIIQAQWNLLPYKS 447
            ++    D   L  +D   +++ + W L P  S
Sbjct: 528 -KYSAKGDFKILEQLDKPNEVLSSVWALAPTSS 559


>09_04_0242 +
           15969091-15969128,15970172-15970409,15971439-15971668,
           15972235-15972469,15973133-15973224,15973333-15973336
          Length = 278

 Score = 31.5 bits (68), Expect = 0.44
 Identities = 24/82 (29%), Positives = 34/82 (41%), Gaps = 13/82 (15%)
 Frame = +1

Query: 19  GHLKPAVFSDEPVGKGDSILAAGYPYFS----EMNLPDLRPTVTS-----GHINNVSPS- 168
           G   P  F  +PV KGD ++  GYP+ S      NL     +VT+     G + +  P  
Sbjct: 126 GEYPPVAFDHQPVRKGDPLVLLGYPWPSSKTGSTNLGSFFGSVTNEAALVGKLKDTPPEE 185

Query: 169 ---LIQASCCVQSGFSGGPILR 225
               + A      G SG P+ R
Sbjct: 186 HMMTVNADYSGAGGSSGAPVFR 207


>06_01_1188 + 10219546-10219664,10220855-10223660
          Length = 974

 Score = 29.5 bits (63), Expect = 1.8
 Identities = 13/49 (26%), Positives = 24/49 (48%), Gaps = 1/49 (2%)
 Frame = +1

Query: 16  WGHLKPA-VFSDEPVGKGDSILAAGYPYFSEMNLPDLRPTVTSGHINNV 159
           W HL+   +F D PVG+  ++ +  +     ++L D +   T   I N+
Sbjct: 552 WNHLRSVTLFGDRPVGRTPALCSPQFRMLRVLDLEDAKFKFTQNDIRNI 600


>02_04_0374 - 22455844-22455961,22456056-22456777,22456977-22457552
          Length = 471

 Score = 28.3 bits (60), Expect = 4.1
 Identities = 15/36 (41%), Positives = 19/36 (52%), Gaps = 2/36 (5%)
 Frame = +1

Query: 61  KGDSILAAGYPYFSEMNLPDL--RPTVTSGHINNVS 162
           KG S++  GYP       P +   P  TSGHI N+S
Sbjct: 381 KGKSLIGNGYPLEPCSLGPSIMCNPVSTSGHIGNIS 416


>09_06_0269 -
           21947847-21947904,21947988-21948169,21948268-21948963,
           21949378-21950021,21950441-21950543,21950618-21950812,
           21951308-21951931
          Length = 833

 Score = 27.5 bits (58), Expect = 7.2
 Identities = 16/50 (32%), Positives = 26/50 (52%)
 Frame = -1

Query: 254 TTSTEDSPVILNIGPPLKPD*TQQDAWIRDGETLLICPEVTVGLKSGKFI 105
           +TST  S V  N  PP  P   Q+  W++D  +      + +G+K G+F+
Sbjct: 580 STSTPRSSVDANYKPPPIPHLKQEKKWMQDQPS----KGLNMGVKEGEFL 625


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,741,352
Number of Sequences: 37544
Number of extensions: 249153
Number of successful extensions: 544
Number of sequences better than 10.0: 5
Number of HSP's better than 10.0 without gapping: 535
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 544
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1186491600
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)