Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D22
         (641 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces...   256   2e-69
SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein L15b|Schizos...   255   5e-69
SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|ch...    27   2.3  
SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated protei...    27   3.0  
SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces ...    26   5.3  
SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter family|Sch...    25   7.0  
SPBC244.01c |sid4||SIN component scaffold protein Sid4 |Schizosa...    25   7.0  
SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces ...    25   7.0  
SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces ...    25   9.3  

>SPCC576.11 |rpl15||60S ribosomal protein L15|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 201

 Score =  256 bits (627), Expect = 2e-69
 Identities = 122/204 (59%), Positives = 144/204 (70%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 205
           MGAY+Y++EL +KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 206 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 385
           I+RI               TYGKP   GVN LK  R+ +  AEE            NSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 386 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRF 565
           V QD++YK+FEVIL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHRF
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRF 180

Query: 566 SQTKGGSRRAAWLRRNTLQLRRKR 637
           + +    + A WLR NTL LRR R
Sbjct: 181 NNS---PQHATWLRHNTLSLRRYR 201


>SPAC1783.08c |rpl1502|rpl15-2|60S ribosomal protein
           L15b|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 201

 Score =  255 bits (624), Expect = 5e-69
 Identities = 121/204 (59%), Positives = 144/204 (70%)
 Frame = +2

Query: 26  MGAYRYIQELYRKKLSDVMRFLLRIRVWQYRQLTRMHRAPRPTRPDKARRLGYRAKQGYV 205
           MGAY+Y++EL +KK SDV  FL R+R W+YRQ+  +HRA RP+RPDKARRLGY+AKQGYV
Sbjct: 1   MGAYKYLEELAKKKQSDVNLFLSRVRAWEYRQMNVIHRASRPSRPDKARRLGYKAKQGYV 60

Query: 206 IFRIXXXXXXXXXXXXXXATYGKPKSHGVNQLKPTRNLQSIAEEXXXXXXXXXXXXNSYW 385
           I+RI               TYGKP   GVN LK  R+ +  AEE            NSYW
Sbjct: 61  IYRIRVRRGGRKRPVPKGQTYGKPVHQGVNHLKYQRSARCTAEERVGRYCSNLRVLNSYW 120

Query: 386 VAQDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHKHREMRGLTSAGKSSRGLGKGHRF 565
           V QD++YK+FEVIL+DPSHKAIRRDP+INWIVN VHKHRE RGLTS GK SRG+GKGHR+
Sbjct: 121 VNQDATYKFFEVILVDPSHKAIRRDPRINWIVNPVHKHRESRGLTSIGKKSRGIGKGHRY 180

Query: 566 SQTKGGSRRAAWLRRNTLQLRRKR 637
           + +    + A WLR NTL LRR R
Sbjct: 181 NNS---PQHATWLRHNTLSLRRYR 201


>SPCC1393.07c |mug4||sequence orphan|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 845

 Score = 27.1 bits (57), Expect = 2.3
 Identities = 12/29 (41%), Positives = 18/29 (62%)
 Frame = -2

Query: 112 LPHSYTQEKSHNIAQLFPIQLLYISVRAH 26
           LPHS   EKS N+ Q   +QL  ++++ H
Sbjct: 761 LPHSCEMEKSLNVLQHKVLQLQAVNMKLH 789


>SPAC3G9.12 |peg1|cls1|CLASP family microtubule-associated
            protein|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 1462

 Score = 26.6 bits (56), Expect = 3.0
 Identities = 12/35 (34%), Positives = 17/35 (48%)
 Frame = +2

Query: 392  QDSSYKYFEVILIDPSHKAIRRDPKINWIVNAVHK 496
            +  S KY E     P H  +   PK  WI++ +HK
Sbjct: 1182 KSESNKYQEQAYSTPLHHTLNVLPKNKWILSRMHK 1216


>SPAC16E8.13 |||ubiquitin-protein ligase E3 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 547

 Score = 25.8 bits (54), Expect = 5.3
 Identities = 14/28 (50%), Positives = 17/28 (60%)
 Frame = -2

Query: 130 TSQLAILPHSYTQEKSHNIAQLFPIQLL 47
           +SQL  L H+Y +EKS N   L  IQ L
Sbjct: 433 SSQLEHLKHNYEEEKSMNENLLVRIQTL 460


>SPCC1840.12 ||SPCC965.02|OPT oligopeptide transporter
           family|Schizosaccharomyces pombe|chr 3|||Manual
          Length = 791

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 9/26 (34%), Positives = 17/26 (65%)
 Frame = +3

Query: 309 LATCSLLLRSVLVAGVVVYACLIHTG 386
           L T + +   V +AG+ +Y C+++TG
Sbjct: 730 LITAAAMDCGVAIAGLFIYFCVVYTG 755


>SPBC244.01c |sid4||SIN component scaffold protein Sid4
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 660

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 10/21 (47%), Positives = 11/21 (52%)
 Frame = +3

Query: 573 PREVPVAPPGYVATPCNCVAS 635
           P   PV P GY  T   CV+S
Sbjct: 259 PESYPVPPSGYPLTSSTCVSS 279


>SPCC1020.02 |spc7||kinetochore protein Spc7|Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 1364

 Score = 25.4 bits (53), Expect = 7.0
 Identities = 11/43 (25%), Positives = 21/43 (48%)
 Frame = -2

Query: 571 LREAMSLAETTRAFPCGRQTAHLAMFVYRIHDPIDLRITANSL 443
           L E   +  T+  FPC   T+HL +    + + +  +I  N++
Sbjct: 520 LSEEQPMELTSTVFPCENSTSHLEVEEAAMDETVAFQIRGNNV 562


>SPAC23H3.15c ||SPAC25H1.01c|sequence orphan|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 325

 Score = 25.0 bits (52), Expect = 9.3
 Identities = 15/34 (44%), Positives = 19/34 (55%), Gaps = 1/34 (2%)
 Frame = +2

Query: 515 LTSAGKSSRGLGKG-HRFSQTKGGSRRAAWLRRN 613
           ++SAG S  G GKG +    T   +RRAA   RN
Sbjct: 236 VSSAGYSGEGYGKGTYATDTTAEANRRAATGTRN 269


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,591,803
Number of Sequences: 5004
Number of extensions: 49529
Number of successful extensions: 146
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 142
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 142
length of database: 2,362,478
effective HSP length: 70
effective length of database: 2,012,198
effective search space used: 287744314
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)