Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D21
(492 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPBC947.13 |rba50||RNA polymerase II associated protein |Schizos... 28 0.88
SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|ch... 28 0.88
SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces pomb... 27 2.0
SPBC12D12.05c |||mitochondrial carrier, calcium binding subfamil... 27 2.0
SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces po... 26 3.5
SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr... 26 3.5
SPAC1783.04c |hst4||Sir2 family histone deacetylase Hst4|Schizos... 26 3.5
SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr... 25 6.2
SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase ... 25 6.2
SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr 1|... 25 8.2
SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large subunit|... 25 8.2
>SPBC947.13 |rba50||RNA polymerase II associated protein
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 452
Score = 27.9 bits (59), Expect = 0.88
Identities = 22/62 (35%), Positives = 27/62 (43%), Gaps = 1/62 (1%)
Frame = +1
Query: 70 FDDTKMNNSQVFCDENDDN-YNEWHKSYGTPDLTTPVSQVQCGGCGALLHCNDPAIPGYL 246
FD T + QV D ND + Y + H Y P+L Q+Q LH PA Y
Sbjct: 261 FDTTHLPEKQVTLDPNDPSFYEQLHDKY-FPNLPVDEKQMQ------WLHDPSPAENSYH 313
Query: 247 PS 252
PS
Sbjct: 314 PS 315
>SPCC794.04c |||membrane transporter|Schizosaccharomyces pombe|chr
3|||Manual
Length = 547
Score = 27.9 bits (59), Expect = 0.88
Identities = 11/39 (28%), Positives = 17/39 (43%)
Frame = -3
Query: 160 PEFHKTCAIHYNCHHFHHKTLVNCSFWYHQNVHN*SSTY 44
PE H + + + KT NC WY+++ H Y
Sbjct: 286 PETHSETLLDFKARYLRKKT--NCDKWYNEHEHQRDPAY 322
>SPAC57A7.09 |||human RNF family homolog|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 372
Score = 26.6 bits (56), Expect = 2.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = +1
Query: 16 RHEFDRSNIDKWMTNYEH 69
+HEF R I KW+ +Y H
Sbjct: 340 KHEFHRPCIAKWIVDYRH 357
>SPBC12D12.05c |||mitochondrial carrier, calcium binding
subfamily|Schizosaccharomyces pombe|chr 2|||Manual
Length = 426
Score = 26.6 bits (56), Expect = 2.0
Identities = 11/34 (32%), Positives = 16/34 (47%)
Frame = -3
Query: 448 YGTWKIHEIHHQQHQGFHILNRL*QTFHTLLIVH 347
+G WK+H H QH + + T H L+ H
Sbjct: 75 HGYWKLHPHPHHQHDSIIPASWIHDTPHMKLVFH 108
>SPBP22H7.02c |||RNA-binding protein Mrd1 |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 833
Score = 25.8 bits (54), Expect = 3.5
Identities = 14/34 (41%), Positives = 19/34 (55%)
Frame = +1
Query: 34 SNIDKWMTNYEHFDDTKMNNSQVFCDENDDNYNE 135
SN W N E FD T++ N + DE+DD Y +
Sbjct: 154 SNSRSW-ENEEVFD-TEITNPVIPADEDDDEYQD 185
>SPCC645.06c |rgf3|lad1|RhoGEF Rgf3|Schizosaccharomyces pombe|chr
3|||Manual
Length = 1275
Score = 25.8 bits (54), Expect = 3.5
Identities = 8/22 (36%), Positives = 16/22 (72%)
Frame = -3
Query: 490 NGSIRPNDVNNTRPYGTWKIHE 425
N ++ N +NN++P G ++IH+
Sbjct: 1137 NDTLFRNRINNSKPLGVFRIHD 1158
>SPAC1783.04c |hst4||Sir2 family histone deacetylase
Hst4|Schizosaccharomyces pombe|chr 1|||Manual
Length = 415
Score = 25.8 bits (54), Expect = 3.5
Identities = 8/16 (50%), Positives = 12/16 (75%)
Frame = +1
Query: 283 LKTIECQRCHFLKEYN 330
L+ + C RC FLK++N
Sbjct: 187 LEVVSCTRCSFLKKFN 202
>SPAP7G5.03 |||conjugation protein |Schizosaccharomyces pombe|chr
1|||Manual
Length = 703
Score = 25.0 bits (52), Expect = 6.2
Identities = 8/18 (44%), Positives = 13/18 (72%)
Frame = +3
Query: 417 WWISWIFHVPYGLVLLTS 470
W+I++IFH P ++L S
Sbjct: 365 WFITYIFHPPAAMILFIS 382
>SPAC19G12.14 |its3||1-phosphatidylinositol-4-phosphate 5-kinase
Its3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 742
Score = 25.0 bits (52), Expect = 6.2
Identities = 11/34 (32%), Positives = 18/34 (52%)
Frame = -3
Query: 121 HHFHHKTLVNCSFWYHQNVHN*SSTYLY*TYRIH 20
HH HK L + Y+++V N +T + Y +H
Sbjct: 382 HHSEHKFLREILYDYYEHVKNNPNTLISQFYGLH 415
>SPAC15F9.01c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 227
Score = 24.6 bits (51), Expect = 8.2
Identities = 10/26 (38%), Positives = 15/26 (57%)
Frame = +1
Query: 118 DDNYNEWHKSYGTPDLTTPVSQVQCG 195
+D+YN+W S T L + VS + G
Sbjct: 20 EDDYNDWEGSSDTKTLYSSVSDSKIG 45
>SPBC28F2.12 |rpb1||DNA-directed RNA polymerase II large
subunit|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1752
Score = 24.6 bits (51), Expect = 8.2
Identities = 12/38 (31%), Positives = 16/38 (42%)
Frame = +1
Query: 139 HKSYGTPDLTTPVSQVQCGGCGALLHCNDPAIPGYLPS 252
+K +P T+P S G G P+ PGY S
Sbjct: 1531 YKGVQSPGYTSPFSSAMSPGYGLTSPSYSPSSPGYSTS 1568
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,136,571
Number of Sequences: 5004
Number of extensions: 44568
Number of successful extensions: 156
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 144
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 156
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 192109570
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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