Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D21
(492 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
02_01_0037 + 261405-261779,261880-262065,262185-262271,262341-26... 37 0.008
07_03_0655 - 20312389-20312560,20312785-20312936,20313049-203132... 31 0.50
06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089 29 2.0
08_02_0269 + 15087481-15087893,15087978-15088074,15089068-150891... 29 2.7
01_06_0249 + 27868897-27871599 28 3.5
12_01_1045 - 10739396-10739402,10739968-10740239,10740361-107409... 27 6.2
03_06_0513 - 34432798-34433043,34433272-34433436,34433557-344338... 27 6.2
10_08_0324 + 16747117-16747330,16747432-16747559,16747675-167477... 27 8.2
>02_01_0037 +
261405-261779,261880-262065,262185-262271,262341-262420,
262518-262599,262794-262814,263204-263249,263365-263483,
263685-263798,263885-263959,264068-264157,264604-264713,
264902-265160
Length = 547
Score = 37.1 bits (82), Expect = 0.008
Identities = 19/48 (39%), Positives = 25/48 (52%), Gaps = 1/48 (2%)
Frame = +1
Query: 178 SQVQCGGCGALLHCNDPAIPGYL-PSEILKNRTVTELKTIECQRCHFL 318
S C GCGA L D A PGY+ P+ + +L+T+ C RC L
Sbjct: 96 SAAACYGCGAPLQTADEAAPGYVHPATYDLKKRHHQLRTVLCGRCKLL 143
>07_03_0655 -
20312389-20312560,20312785-20312936,20313049-20313207,
20313282-20313531,20313627-20313743,20313842-20313907,
20314008-20314183
Length = 363
Score = 31.1 bits (67), Expect = 0.50
Identities = 17/43 (39%), Positives = 26/43 (60%), Gaps = 1/43 (2%)
Frame = +2
Query: 350 YNQKSMKSLLQSI-KNVKSLVLLMVDLMDFPCSIWPGIVDIIG 475
Y K M + LQ + +V+SLV+ +V DF I PG+V ++G
Sbjct: 210 YPSKLMNTTLQCVFASVQSLVIALVLERDFSRWILPGVVSLVG 252
>06_03_0156 + 17332048-17333550,17334195-17334362,17334715-17335089
Length = 681
Score = 29.1 bits (62), Expect = 2.0
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 145 SYGTPDLTTPVSQVQCGGCGALLHCNDPAIPGY 243
S G D V + C GCG + DP +PG+
Sbjct: 74 SEGRDDEDAAVGRPVCPGCGVFMQDADPNLPGF 106
>08_02_0269 +
15087481-15087893,15087978-15088074,15089068-15089112,
15089281-15089492,15090809-15090911,15091002-15091097,
15091405-15091473,15093341-15093588,15093640-15093759,
15093847-15094284,15094503-15094620,15095262-15095303,
15097099-15097161,15097365-15097475,15097730-15097801,
15097875-15097993,15099682-15099745,15100238-15101860
Length = 1350
Score = 28.7 bits (61), Expect = 2.7
Identities = 20/57 (35%), Positives = 26/57 (45%), Gaps = 2/57 (3%)
Frame = +1
Query: 64 EHFDDTKMNNSQVFCDENDDNYNEWHKSYG--TPDLTTPVSQVQCGGCGALLHCNDP 228
E DD +NS D NDD+ +E + G T D T + + C G LL C P
Sbjct: 205 ESSDDCSYSNSDSSDDNNDDSTDEDTDTDGNATDDDTDMICAI-CDDGGKLLSCEGP 260
>01_06_0249 + 27868897-27871599
Length = 900
Score = 28.3 bits (60), Expect = 3.5
Identities = 16/38 (42%), Positives = 18/38 (47%)
Frame = -1
Query: 483 LSGPMMSTIPGHMEHGKSMRSTISNTKDFTFLIDCNKL 370
LSGP ST GH H S+ TIS D + N L
Sbjct: 111 LSGPRSSTYIGHHHHRYSITQTISFILDGYYSFTSNDL 148
>12_01_1045 -
10739396-10739402,10739968-10740239,10740361-10740941,
10741566-10742586
Length = 626
Score = 27.5 bits (58), Expect = 6.2
Identities = 10/24 (41%), Positives = 14/24 (58%)
Frame = +3
Query: 417 WWISWIFHVPYGLVLLTSLGLIDP 488
W WI VP+ L +L + G +DP
Sbjct: 380 WRHPWIIRVPHSLSMLLNTGEVDP 403
>03_06_0513 -
34432798-34433043,34433272-34433436,34433557-34433842,
34434972-34435054,34435388-34435495,34435687-34435944,
34436388-34436555,34436865-34437090,34437923-34438035,
34438180-34438548,34439475-34439516,34439576-34439686,
34439883-34440086
Length = 792
Score = 27.5 bits (58), Expect = 6.2
Identities = 19/51 (37%), Positives = 29/51 (56%), Gaps = 3/51 (5%)
Frame = +1
Query: 184 VQCGGCGALLH-CNDPAIPGYLPSEILKNRTVTELKTIE--CQRCHFLKEY 327
+ G AL+H C D + PSE++ ++ ELK I+ C+R H+L EY
Sbjct: 713 IDLGTAYALVHLCLDKKLQ---PSELILDKH--ELKQIDFHCERAHYLLEY 758
>10_08_0324 +
16747117-16747330,16747432-16747559,16747675-16747744,
16747832-16747988,16748089-16748701,16749132-16749653,
16749686-16750279,16750359-16750709,16750808-16751395
Length = 1078
Score = 27.1 bits (57), Expect = 8.2
Identities = 12/33 (36%), Positives = 16/33 (48%)
Frame = +1
Query: 31 RSNIDKWMTNYEHFDDTKMNNSQVFCDENDDNY 129
+ IDKW T E ++S D+NDD Y
Sbjct: 156 KDRIDKWKTKQEKRGKLNRDDSDDDDDKNDDEY 188
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 13,807,935
Number of Sequences: 37544
Number of extensions: 281862
Number of successful extensions: 871
Number of sequences better than 10.0: 8
Number of HSP's better than 10.0 without gapping: 841
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 870
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1023611560
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -