Samia BLAST Result against celegans

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D21
         (492 letters)

Database: celegans 
           27,780 sequences; 12,740,198 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical pr...    70   8e-13
AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical...    30   0.79 
AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein p...    30   0.79 
Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical pr...    29   2.4  
U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical p...    28   3.2  
U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical p...    28   3.2  
AL032646-8|CAA21683.1|  198|Caenorhabditis elegans Hypothetical ...    28   3.2  
U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate rece...    28   4.2  
U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical pr...    27   7.4  
AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical ...    27   7.4  
Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical pr...    27   9.8  

>Z93393-2|CAB07689.2|  890|Caenorhabditis elegans Hypothetical
           protein Y48E1B.2a protein.
          Length = 890

 Score = 70.1 bits (164), Expect = 8e-13
 Identities = 30/76 (39%), Positives = 45/76 (59%)
 Frame = +1

Query: 151 GTPDLTTPVSQVQCGGCGALLHCNDPAIPGYLPSEILKNRTVTELKTIECQRCHFLKEYN 330
           GT D   P S  +C GCGA  HC D ++PG++P EIL+      +    C+RCH L+E+N
Sbjct: 317 GTVDEEIPASSRKCTGCGANFHCKDSSLPGFVPLEILEKIDRRSVDQSLCKRCHLLQEHN 376

Query: 331 IALDVSVQSEEYEKFV 378
             L+V+V   +Y + +
Sbjct: 377 FLLNVNVCDVDYTRMM 392



 Score = 36.7 bits (81), Expect = 0.009
 Identities = 15/34 (44%), Positives = 24/34 (70%)
 Frame = +2

Query: 389 KNVKSLVLLMVDLMDFPCSIWPGIVDIIGPDRPI 490
           K  +SLV+L+VD+ D P SI+P +  ++G  RP+
Sbjct: 397 KQPESLVVLVVDVTDLPGSIYPRLASVVGSRRPM 430


>AL117204-20|CAB55136.2|  699|Caenorhabditis elegans Hypothetical
           protein Y116A8C.32 protein.
          Length = 699

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 139 HKSYGTPDLTTPVSQVQCGGCGALLH 216
           HKS+  PD     +Q++C  CGA  H
Sbjct: 438 HKSWECPDAPNVTNQIKCTNCGAFGH 463


>AJ243905-1|CAB64866.1|  699|Caenorhabditis elegans SF1 protein
           protein.
          Length = 699

 Score = 30.3 bits (65), Expect = 0.79
 Identities = 11/26 (42%), Positives = 15/26 (57%)
 Frame = +1

Query: 139 HKSYGTPDLTTPVSQVQCGGCGALLH 216
           HKS+  PD     +Q++C  CGA  H
Sbjct: 438 HKSWECPDAPNVTNQIKCTNCGAFGH 463


>Z82278-6|CAB05258.1|  690|Caenorhabditis elegans Hypothetical
           protein M162.7 protein.
          Length = 690

 Score = 28.7 bits (61), Expect = 2.4
 Identities = 14/45 (31%), Positives = 25/45 (55%)
 Frame = +2

Query: 314 SLKNTISL*TSVYNQKSMKSLLQSIKNVKSLVLLMVDLMDFPCSI 448
           S+K+ IS   +VY    +++ +  +KNV S+VL  +D    P  +
Sbjct: 528 SIKSIISSVQNVYGLLDLEAPINQLKNVNSIVLEEIDKAQDPAKL 572


>U70849-11|AAK29800.1|  897|Caenorhabditis elegans Hypothetical
           protein F29B9.2b protein.
          Length = 897

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 67  HFDDTKMNNSQVFCDENDDNYNEWHKSYGTPDLTTPVSQVQCGGCGALLHCND 225
           +FD+ K    +V  +E     +   +    P+  TP    +CGGCG   H +D
Sbjct: 158 NFDEMKTKKKEVQ-EELKLEVDSDSEEDDVPEQKTPKESDRCGGCGKFTHEDD 209


>U70849-10|AAK29799.1|  910|Caenorhabditis elegans Hypothetical
           protein F29B9.2a protein.
          Length = 910

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 15/53 (28%), Positives = 24/53 (45%)
 Frame = +1

Query: 67  HFDDTKMNNSQVFCDENDDNYNEWHKSYGTPDLTTPVSQVQCGGCGALLHCND 225
           +FD+ K    +V  +E     +   +    P+  TP    +CGGCG   H +D
Sbjct: 171 NFDEMKTKKKEVQ-EELKLEVDSDSEEDDVPEQKTPKESDRCGGCGKFTHEDD 222


>AL032646-8|CAA21683.1|  198|Caenorhabditis elegans Hypothetical
           protein Y54E2A.9 protein.
          Length = 198

 Score = 28.3 bits (60), Expect = 3.2
 Identities = 10/28 (35%), Positives = 16/28 (57%)
 Frame = +1

Query: 70  FDDTKMNNSQVFCDENDDNYNEWHKSYG 153
           FDD  + N Q++C + +   N WH+  G
Sbjct: 118 FDDYGVVNFQLYCGQPNGKRNSWHRLTG 145


>U39849-10|AAA81054.3|  951|Caenorhabditis elegans Glutamate
           receptor family (ampa)protein 4 protein.
          Length = 951

 Score = 27.9 bits (59), Expect = 4.2
 Identities = 18/44 (40%), Positives = 23/44 (52%)
 Frame = +1

Query: 4   RGSERHEFDRSNIDKWMTNYEHFDDTKMNNSQVFCDENDDNYNE 135
           RGS  +E  R  ID+W  N EH   T++  S V     D+NY E
Sbjct: 37  RGSFAYEHLRYAIDRW--NTEHGAHTQIKFSIVSPIRYDNNYEE 78


>U40799-1|AAA81479.1|  250|Caenorhabditis elegans Hypothetical
           protein F42C5.3 protein.
          Length = 250

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/46 (26%), Positives = 22/46 (47%)
 Frame = +1

Query: 10  SERHEFDRSNIDKWMTNYEHFDDTKMNNSQVFCDENDDNYNEWHKS 147
           SE+  FDR   +    + +  D+ +  N +   D  + N N W+K+
Sbjct: 21  SEKETFDRKRRETLEKHKKELDELEKKNKKEEDDLREQNMNLWNKN 66


>AL132943-6|CAC14393.1|  511|Caenorhabditis elegans Hypothetical
           protein Y116F11B.11 protein.
          Length = 511

 Score = 27.1 bits (57), Expect = 7.4
 Identities = 12/32 (37%), Positives = 21/32 (65%)
 Frame = +2

Query: 314 SLKNTISL*TSVYNQKSMKSLLQSIKNVKSLV 409
           S+KN +S   +VYN   M++ +  +KNV ++V
Sbjct: 358 SIKNIVSSLRNVYNLLDMEAPINLLKNVDTIV 389


>Z81510-4|CAB04164.1|  839|Caenorhabditis elegans Hypothetical
           protein F21D9.5 protein.
          Length = 839

 Score = 26.6 bits (56), Expect = 9.8
 Identities = 11/32 (34%), Positives = 15/32 (46%)
 Frame = -3

Query: 487 GSIRPNDVNNTRPYGTWKIHEIHHQQHQGFHI 392
           GS     +  T P   W  H+I +QQ Q  +I
Sbjct: 680 GSAHTEQLWITMPLSNWSFHQISYQQFQKLYI 711


  Database: celegans
    Posted date:  Oct 23, 2007  1:18 PM
  Number of letters in database: 12,740,198
  Number of sequences in database:  27,780
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 12,038,849
Number of Sequences: 27780
Number of extensions: 260295
Number of successful extensions: 836
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 793
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 835
length of database: 12,740,198
effective HSP length: 76
effective length of database: 10,628,918
effective search space used: 924715866
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)