Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D20
(571 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit C... 220 1e-58
SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subuni... 56 4e-09
SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit ... 49 4e-07
SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit C... 42 5e-05
SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit ... 36 0.006
SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain |Schizosaccha... 32 0.051
SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces ... 28 0.84
SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein |Schizosacch... 26 4.5
SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting pro... 26 4.5
SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyc... 25 7.8
>SPAC1D4.04 |cct2||chaperonin-containing T-complex beta subunit
Cct2|Schizosaccharomyces pombe|chr 1|||Manual
Length = 527
Score = 220 bits (537), Expect = 1e-58
Identities = 105/144 (72%), Positives = 123/144 (85%)
Frame = +1
Query: 10 LKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPKRIENANILIANTPMDTDKIKVFGST 189
L IQIIKI GG L++SFLDEGF+LNK +GV+ PK +ENANILIANT MDTDK+KVFG+
Sbjct: 192 LDNIQIIKILGGKLDDSFLDEGFILNKTIGVNCPKVMENANILIANTAMDTDKVKVFGAR 251
Query: 190 IKVDSMVKIAELEVAEKEKMKDKVNKILGHKCNVFINRQLIYNYPEQLFADAGVMAIEHA 369
++VD+ K+AELE AE+EKMK KV KI H N FINRQLIYN+PEQLFADAG+M+IEHA
Sbjct: 252 VRVDTTGKLAELERAEREKMKAKVEKIKSHNINCFINRQLIYNWPEQLFADAGIMSIEHA 311
Query: 370 DFDGIERLALVTGGEIVSTFDTPD 441
DFDGIERL+LVTGGEI STFD P+
Sbjct: 312 DFDGIERLSLVTGGEIASTFDHPE 335
Score = 66.1 bits (154), Expect = 3e-12
Identities = 29/46 (63%), Positives = 38/46 (82%)
Frame = +2
Query: 434 HLTKVKLGHCKLIEQILIGDECLIRFSGVD*GTACTIVIRGATQQV 571
H VKLGHCK IE+I+IG++ +I+FSGV+ G ACTIV+RGAT Q+
Sbjct: 333 HPELVKLGHCKKIEEIIIGEDKMIKFSGVEAGEACTIVLRGATHQL 378
>SPBC12D12.03 |cct1||chaperonin-containing T-complex alpha subunit
Cct1|Schizosaccharomyces pombe|chr 2|||Manual
Length = 556
Score = 56.0 bits (129), Expect = 4e-09
Identities = 38/141 (26%), Positives = 70/141 (49%), Gaps = 2/141 (1%)
Frame = +1
Query: 10 LKAIQIIKISGGLLEESFLDEGFLLNKKVGVHQPK-RIENANILIANTPMDTDKIKV-FG 183
+KA+ I+K G ES L +G+ LN + K R++NA I + + MD K K+ G
Sbjct: 197 VKAVNILKAHGKSSRESVLVKGYALNCTIASQAMKTRVQNAKIAVLD--MDLQKTKMALG 254
Query: 184 STIKVDSMVKIAELEVAEKEKMKDKVNKILGHKCNVFINRQLIYNYPEQLFADAGVMAIE 363
+ +D ++ ++ E ++V KIL NV + + I + + +AG MA+
Sbjct: 255 VHVTIDDPDQLEKIREREVMITLERVKKILNAGANVILTTKGIDDLCLKSIIEAGAMAVR 314
Query: 364 HADFDGIERLALVTGGEIVST 426
+ + R+A +G ++S+
Sbjct: 315 RCKKEDLRRIAKASGATLLSS 335
>SPBC25H2.12c |cct7||chaperonin-containing T-complex eta subunit
Cct7|Schizosaccharomyces pombe|chr 2|||Manual
Length = 558
Score = 49.2 bits (112), Expect = 4e-07
Identities = 37/146 (25%), Positives = 63/146 (43%), Gaps = 4/146 (2%)
Frame = +1
Query: 19 IQIIKISGGLLEESFLDEGFLLNKKVGV----HQPKRIENANILIANTPMDTDKIKVFGS 186
I I K+ GG +E+S L +G K QPK +N IL + ++ K + +
Sbjct: 200 IGIKKVPGGAMEDSLLVKGVAFKKTFSYAGFEQQPKFFKNPKILCLDVELEL-KAEKDNA 258
Query: 187 TIKVDSMVKIAELEVAEKEKMKDKVNKILGHKCNVFINRQLIYNYPEQLFADAGVMAIEH 366
++VD + + + AE + K+ I+ V +++ I + Q FAD +
Sbjct: 259 EVRVDKVQEYQNIVDAEWRIIFSKLEAIVATGAKVVLSKLPIGDLATQYFADRDIFCAGR 318
Query: 367 ADFDGIERLALVTGGEIVSTFDTPDE 444
D + R+ GG I ST +E
Sbjct: 319 VAADDLNRVVQAVGGSIQSTCSNIEE 344
Score = 29.1 bits (62), Expect = 0.48
Identities = 13/39 (33%), Positives = 18/39 (46%)
Frame = +2
Query: 452 LGHCKLIEQILIGDECLIRFSGVD*GTACTIVIRGATQQ 568
LG C E+ IG + F G CT+++RG Q
Sbjct: 347 LGTCDTFEERQIGGDRFNLFEGCPKAKTCTLILRGGADQ 385
>SPBC646.11 |cct6||chaperonin-containing T-complex zeta subunit
Cct6|Schizosaccharomyces pombe|chr 2|||Manual
Length = 535
Score = 42.3 bits (95), Expect = 5e-05
Identities = 40/152 (26%), Positives = 72/152 (47%), Gaps = 11/152 (7%)
Frame = +1
Query: 10 LKAIQIIKISGGLLEESFLDEGFLLNKKVG-VHQPKRIENANILIANTPMDTDKIKVFGS 186
L ++I+K+ ++ L G LL+ PK+++NA ILI N ++ +K ++ S
Sbjct: 186 LHMVEIMKMQNRSASDTQLIRGLLLDHGARHPDMPKQVKNAYILILNVSLEYEKSEI-NS 244
Query: 187 TIKVDSMVKIAELEVAEKEKMKDKVNKILGHK---CN-------VFINRQLIYNYPEQLF 336
+ + L +E++ + +K+ KI+ K C V IN++ I +
Sbjct: 245 GFFYSTSEQRERLVESERKFVDNKLRKIVELKKEVCERDPTANFVIINQKGIDPLSLDVL 304
Query: 337 ADAGVMAIEHADFDGIERLALVTGGEIVSTFD 432
A G+MA+ A +ERL L GG ++ D
Sbjct: 305 AKNGIMALRRAKRRNMERLQLACGGVAQNSVD 336
>SPBC106.06 |cct4||chaperonin-containing T-complex delta subunit
Cct4|Schizosaccharomyces pombe|chr 2|||Manual
Length = 527
Score = 35.5 bits (78), Expect = 0.006
Identities = 33/149 (22%), Positives = 66/149 (44%), Gaps = 7/149 (4%)
Frame = +1
Query: 10 LKAIQIIKISGGLLEESFLDEGFLLNKKV--GVHQPKRIENANILIANTPMDTDKIKVFG 183
LK I+I+K GG+++++ L G L + P RIE ANI + + K +
Sbjct: 192 LKDIRIVKKLGGIIDDTELIPGLALTQTAVKSAGGPTRIEKANIALIQFQLSPPKPDMEN 251
Query: 184 STIKVDSMVKIAELEVAEKEKMKDKVNKILGHKCNVF-----INRQLIYNYPEQLFADAG 348
+ V+ ++ ++ E++ + + KI NV I R + + A
Sbjct: 252 QVV-VNDYRQMDKILKEERQYLLNMCKKIKKAGANVILIQKSILRDAVNDLALHFLAKLK 310
Query: 349 VMAIEHADFDGIERLALVTGGEIVSTFDT 435
+M I+ + D +E + TG + ++ ++
Sbjct: 311 IMVIKDIERDEVEFICKSTGCKPIADIES 339
Score = 31.9 bits (69), Expect = 0.068
Identities = 16/38 (42%), Positives = 24/38 (63%), Gaps = 1/38 (2%)
Frame = +2
Query: 449 KLGHCKLIEQILIGDECLIRFSGV-D*GTACTIVIRGA 559
KLGH L+E+ E +++FSGV + G +I+ RGA
Sbjct: 344 KLGHADLVEETSSSGEKIVKFSGVKNAGKTVSILCRGA 381
>SPAC1093.06c |dhc1|SPAC30C2.01c|dynein heavy chain
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 4196
Score = 32.3 bits (70), Expect = 0.051
Identities = 16/38 (42%), Positives = 21/38 (55%)
Frame = -2
Query: 369 SVFNCHNAGISKQLFWVVVNKLPINKHITFMSQNLVHF 256
+VFN N GIS + N+L I K +T M L+HF
Sbjct: 1770 AVFNFINDGISSLVLLADENELSIKKKVTLMFNELLHF 1807
>SPBC3D6.13c |||protein disulfide isomerase |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 726
Score = 28.3 bits (60), Expect = 0.84
Identities = 18/40 (45%), Positives = 21/40 (52%)
Frame = -3
Query: 479 SVQSICSGRA*LSSGVSNVETISPPVTRASRSIPSKSACS 360
S S+ S +A LSS T S PVT S S+ KSA S
Sbjct: 202 SPTSVASKKATLSSVSKVASTSSLPVTSVSASVDPKSAAS 241
>SPAC18B11.11 ||SPAC1F5.01|GTPase activating protein
|Schizosaccharomyces pombe|chr 1|||Manual
Length = 1294
Score = 25.8 bits (54), Expect = 4.5
Identities = 14/44 (31%), Positives = 23/44 (52%)
Frame = -1
Query: 490 TNQYLFNQFAVAELDFRQVYQTWRQFHRQ*LEQVARYHRSQRVQ 359
TN Y F + A+L+ VY T Q+H + + A+ R +V+
Sbjct: 605 TNDYCFVNLSPAQLELISVYST--QWHNPFISEEAQRCRDNKVK 646
>SPAC15A10.16 |bud6|aip3, fat1, SPAC15E1.01|actin interacting
protein 3 homolog Bud6|Schizosaccharomyces pombe|chr
1|||Manual
Length = 1385
Score = 25.8 bits (54), Expect = 4.5
Identities = 18/58 (31%), Positives = 27/58 (46%), Gaps = 1/58 (1%)
Frame = -3
Query: 509 NESDTRHQSISVQSICSGRA*LSSGVSNVETISPPVTRASRSIPS-KSACSIAITPAS 339
N S+ + V S LSS N ++PP+ + SR+I S S S + P+S
Sbjct: 381 NRSNVFPGATDVTRSVSDHRILSSSTINDGEVAPPLPQRSRTISSPNSPLSATVLPSS 438
>SPAC824.05 |vps16||HOPS complex subunit Vps16 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 835
Score = 25.0 bits (52), Expect = 7.8
Identities = 10/28 (35%), Positives = 17/28 (60%)
Frame = +1
Query: 193 KVDSMVKIAELEVAEKEKMKDKVNKILG 276
KVD V++ +++ A +E K K +LG
Sbjct: 784 KVDMWVQVGDVKSASEEAAKSKSGSVLG 811
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,321,338
Number of Sequences: 5004
Number of extensions: 46749
Number of successful extensions: 164
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 155
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 163
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 242064240
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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