Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D19
         (598 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

03_01_0282 + 2181598-2183124                                           29   2.1  
01_01_1221 + 9873399-9873869,9873969-9874033,9874226-9874655,987...    28   6.5  
06_03_0333 - 19658344-19658363,19659286-19659916                       27   8.6  

>03_01_0282 + 2181598-2183124
          Length = 508

 Score = 29.5 bits (63), Expect = 2.1
 Identities = 13/32 (40%), Positives = 17/32 (53%)
 Frame = +2

Query: 497 FLQSLEIFICFKCFYILNMSITHKNGTIGKQW 592
           FL+ L  F+CF  FY  ++    KN  I  QW
Sbjct: 8   FLELLLSFLCFGFFYYYHVKSKQKNPVIPLQW 39


>01_01_1221 +
           9873399-9873869,9873969-9874033,9874226-9874655,
           9874656-9874754,9874977-9875240
          Length = 442

 Score = 27.9 bits (59), Expect = 6.5
 Identities = 11/39 (28%), Positives = 19/39 (48%)
 Frame = +3

Query: 12  RYTRISVNAIFFGTYPSRKVGYYCIVLVIISFKTRINFR 128
           +YT      IF+ TY S K+GY+  + +    K    ++
Sbjct: 202 KYTFFKPKFIFYATYLSEKIGYWRYITIFRHLKANPEYQ 240


>06_03_0333 - 19658344-19658363,19659286-19659916
          Length = 216

 Score = 27.5 bits (58), Expect = 8.6
 Identities = 16/45 (35%), Positives = 23/45 (51%), Gaps = 1/45 (2%)
 Frame = -2

Query: 144 YMIRYI*N*YES*M-KLLQVLYSNTPLYARDTFRKKSR*LKFAYI 13
           Y  RYI   Y+    +L    YS+ PLY  D FR++ R  K  ++
Sbjct: 63  YKRRYINRDYQDDHNRLFAKYYSDNPLYTDDQFRRRFRMRKHLFL 107


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 11,921,436
Number of Sequences: 37544
Number of extensions: 186991
Number of successful extensions: 281
Number of sequences better than 10.0: 3
Number of HSP's better than 10.0 without gapping: 281
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 281
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1423789920
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)