Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D18
(573 letters)
Database: spombe
5004 sequences; 2,362,478 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
SPAC1783.07c |pap1|caf3, caf3|transcription factor Caf3|Schizosa... 27 1.5
SPBC27B12.11c |||transcription factor |Schizosaccharomyces pombe... 27 1.5
SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces pomb... 26 3.4
SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr ... 26 3.4
SPAC57A10.12c |ura3||dihydroorotate dehydrogenase Ura3|Schizosac... 26 4.5
SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1 |Schizo... 26 4.5
SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyc... 25 6.0
SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr 1... 25 6.0
SPAC1952.16 |rga9||RhoGAp, GTPase activator towards Rho/Rac/Cdc4... 25 6.0
>SPAC1783.07c |pap1|caf3, caf3|transcription factor
Caf3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 552
Score = 27.5 bits (58), Expect = 1.5
Identities = 14/40 (35%), Positives = 24/40 (60%)
Frame = +3
Query: 453 VSTSTNIPAPVSGPTQLVDKVALNRKRRPKMVSNAPRTAS 572
+S+++NIP + P Q D A ++KR P ++ RT+S
Sbjct: 8 LSSTSNIPIAKAEPEQSADFSASHKKRGPVSDRSSRRTSS 47
>SPBC27B12.11c |||transcription factor |Schizosaccharomyces
pombe|chr 2|||Manual
Length = 738
Score = 27.5 bits (58), Expect = 1.5
Identities = 10/30 (33%), Positives = 17/30 (56%)
Frame = -1
Query: 501 AESGQTQVPEYSSKWRPAVHFTSVASPSMQ 412
A+ + VP++ WR +H S+A+ S Q
Sbjct: 619 ADDEEEDVPDHQPSWRGRIHSFSIATDSSQ 648
>SPCC645.07 |rgf1||RhoGEF for Rho1, Rgf1|Schizosaccharomyces
pombe|chr 3|||Manual
Length = 1334
Score = 26.2 bits (55), Expect = 3.4
Identities = 19/80 (23%), Positives = 29/80 (36%)
Frame = +3
Query: 261 PSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMPPK* 440
P G + L++ + L + S T +H+ T V P
Sbjct: 208 PYGSPVRSSKNPFLSSNSRLPTDDSSHTVGSHSFTSGTHPPIVSSNSAFTLPNAVTPAA- 266
Query: 441 SAPLVSTSTNIPAPVSGPTQ 500
APL+ + + PA VS P Q
Sbjct: 267 QAPLIRSVSEYPANVSPPAQ 286
>SPAC3A11.07 |||NADH dehydrogenase|Schizosaccharomyces pombe|chr
1|||Manual
Length = 551
Score = 26.2 bits (55), Expect = 3.4
Identities = 16/59 (27%), Positives = 31/59 (52%)
Frame = -3
Query: 466 VEVETSGALHFGGITFDAVEEDVADRRVGVSEETVTAWALAVWLGGLQLSPVSAVNVEG 290
+++ T+ AL +T + + +V + G +E V + L VW GG + P++ +EG
Sbjct: 324 IKIRTNTALK--KVTAENIHVEVKNPD-GSKQEEVIPYGLLVWAGGNRARPLTKKLMEG 379
>SPAC57A10.12c |ura3||dihydroorotate dehydrogenase
Ura3|Schizosaccharomyces pombe|chr 1|||Manual
Length = 443
Score = 25.8 bits (54), Expect = 4.5
Identities = 16/38 (42%), Positives = 18/38 (47%), Gaps = 1/38 (2%)
Frame = +2
Query: 332 PKPNSQCPRRNGFFAHPDTSVCNIF-FNCIEGDATEVK 442
PKP P+ F PD SV N + FN I DA K
Sbjct: 149 PKPQPGNPKPRYFRLKPDLSVINRYGFNSIGHDAILAK 186
>SPBC25B2.02c |mam1|SPBC2G5.09c|M-factor transporter Mam1
|Schizosaccharomyces pombe|chr 2|||Manual
Length = 1336
Score = 25.8 bits (54), Expect = 4.5
Identities = 13/41 (31%), Positives = 20/41 (48%)
Frame = +2
Query: 149 PNKDGQYEDERQCDKFYECVDGVATTKICPDGLVFDPTIRK 271
P Y D+ ++ E V G T +C ++FD TIR+
Sbjct: 488 PTYGNIYLDDFPLEEIDEHVLGSTITLVCQQPVIFDMTIRE 528
>SPAC17C9.06 |sam50||SAM complex subunit Sam50 |Schizosaccharomyces
pombe|chr 1|||Manual
Length = 475
Score = 25.4 bits (53), Expect = 6.0
Identities = 9/18 (50%), Positives = 12/18 (66%)
Frame = -1
Query: 459 WRPAVHFTSVASPSMQLK 406
WR H T ASPS++L+
Sbjct: 240 WRQVTHLTEYASPSVRLE 257
>SPAPB18E9.04c |||sequence orphan|Schizosaccharomyces pombe|chr
1|||Manual
Length = 800
Score = 25.4 bits (53), Expect = 6.0
Identities = 20/73 (27%), Positives = 27/73 (36%)
Frame = +3
Query: 264 SGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVTVXXXXXXXXXXXXXXXXXKVMPPK*S 443
S STS+ P T T+ T + N P T S T +P
Sbjct: 142 STSSTSIPIPPTSTSSTDTNSN-PLPTTSTSCTTSTSIPPTGGSSSLSTPITPTVP---- 196
Query: 444 APLVSTSTNIPAP 482
P ++ST+IP P
Sbjct: 197 -PTSTSSTSIPIP 208
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 240 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVT 365
T SI P+G ST+ +P+ T + PP +++ T
Sbjct: 286 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 327
Score = 25.0 bits (52), Expect = 7.9
Identities = 12/42 (28%), Positives = 20/42 (47%)
Frame = +3
Query: 240 TDLCSILPSGKSTSVTSPSTLTAETGLSCNPPSQTASAHAVT 365
T SI P+G ST+ +P+ T + PP +++ T
Sbjct: 340 TTSTSIPPTGNSTTPVTPTVPPTSTSSTSTPPPPASTSSTGT 381
>SPAC1952.16 |rga9||RhoGAp, GTPase activator towards
Rho/Rac/Cdc42-like small GTPases|Schizosaccharomyces
pombe|chr 1|||Manual
Length = 684
Score = 25.4 bits (53), Expect = 6.0
Identities = 13/49 (26%), Positives = 28/49 (57%), Gaps = 1/49 (2%)
Frame = -3
Query: 409 EEDVADRR-VGVSEETVTAWALAVWLGGLQLSPVSAVNVEGLVTLVDFP 266
+ ++ DR+ + S ++ + +LA L L ++P + +GL+ +VD P
Sbjct: 144 KSNLTDRKPIPTSRKSNKSDSLASALSQLDINPSNVNKFDGLINIVDHP 192
Database: spombe
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 2,362,478
Number of sequences in database: 5004
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,117,245
Number of Sequences: 5004
Number of extensions: 41220
Number of successful extensions: 140
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 127
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 140
length of database: 2,362,478
effective HSP length: 69
effective length of database: 2,017,202
effective search space used: 244081442
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -