Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D18
(573 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
07_01_1054 + 9250298-9250428,9250889-9251489 31 0.86
01_06_1658 - 38954953-38955145,38955310-38955368,38955541-389555... 30 1.5
06_03_0336 + 19671500-19672150,19672681-19673301 29 2.0
05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320 29 3.5
09_04_0457 - 17736158-17737336 28 4.6
04_04_1538 + 34239913-34241274,34241468-34241578 28 6.1
08_02_0105 + 12448808-12449152,12449218-12449409,12449520-124496... 27 8.0
05_03_0397 + 13488642-13488941,13489711-13489963,13490594-134906... 27 8.0
03_02_0511 + 9016215-9016425,9017292-9017365,9018399-9018609,901... 27 8.0
02_05_0239 + 27101440-27101904 27 8.0
01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-19... 27 8.0
>07_01_1054 + 9250298-9250428,9250889-9251489
Length = 243
Score = 30.7 bits (66), Expect = 0.86
Identities = 16/44 (36%), Positives = 21/44 (47%), Gaps = 2/44 (4%)
Frame = -3
Query: 457 ETSGALHFGGITFDAVEEDVADR--RVGVSEETVTAWALAVWLG 332
E G LH G+ VE+ D VG+ E+ V AW+ W G
Sbjct: 112 EVGGGLHRSGVADSKVEDGRRDAGVEVGMQEKVVQAWSGRRWRG 155
>01_06_1658 -
38954953-38955145,38955310-38955368,38955541-38955587,
38956264-38956294,38956507-38956569,38956760-38956855,
38956939-38957022,38957112-38957204,38957505-38957582,
38957938-38958028,38958108-38958208,38958303-38959121,
38959216-38959266
Length = 601
Score = 29.9 bits (64), Expect = 1.5
Identities = 12/20 (60%), Positives = 15/20 (75%)
Frame = -1
Query: 351 HWLFGLGGCSSVLSPQSTLK 292
+WLF GG S LSP+STL+
Sbjct: 327 YWLFAYGGYSGDLSPESTLE 346
>06_03_0336 + 19671500-19672150,19672681-19673301
Length = 423
Score = 29.5 bits (63), Expect = 2.0
Identities = 12/34 (35%), Positives = 19/34 (55%)
Frame = +2
Query: 212 GVATTKICPDGLVFDPTIRKINKCDQPFNVDCGD 313
G A +C + +V T+R++ C F+VDC D
Sbjct: 144 GGALCAVCLEDVVAGETVRRLPSCGHLFHVDCID 177
>05_03_0059 + 7900544-7900673,7900774-7901027,7901949-7902320
Length = 251
Score = 28.7 bits (61), Expect = 3.5
Identities = 12/30 (40%), Positives = 21/30 (70%)
Frame = -1
Query: 324 SSVLSPQSTLKGWSHLLIFLMVGSNTSPSG 235
+++L P+S++ G+ LL L+VG+NT G
Sbjct: 161 ATILDPRSSVPGFGPLLTGLIVGANTIAGG 190
>09_04_0457 - 17736158-17737336
Length = 392
Score = 28.3 bits (60), Expect = 4.6
Identities = 13/41 (31%), Positives = 19/41 (46%)
Frame = +2
Query: 191 KFYECVDGVATTKICPDGLVFDPTIRKINKCDQPFNVDCGD 313
K ++ V G +C D T+R + KC F+ DC D
Sbjct: 114 KAHKSVKGALECAVCISEFDDDETLRLLPKCSHVFHQDCID 154
>04_04_1538 + 34239913-34241274,34241468-34241578
Length = 490
Score = 27.9 bits (59), Expect = 6.1
Identities = 10/19 (52%), Positives = 14/19 (73%), Gaps = 2/19 (10%)
Frame = -2
Query: 569 CCSWGIRNH--LWSSFPVQ 519
CC++GIRNH +W PV+
Sbjct: 408 CCNYGIRNHCIVWGCCPVE 426
>08_02_0105 +
12448808-12449152,12449218-12449409,12449520-12449685,
12449771-12450201
Length = 377
Score = 27.5 bits (58), Expect = 8.0
Identities = 12/24 (50%), Positives = 15/24 (62%)
Frame = +3
Query: 441 SAPLVSTSTNIPAPVSGPTQLVDK 512
+A L +TN+PAP SG LV K
Sbjct: 196 TASLQGANTNLPAPTSGVATLVQK 219
>05_03_0397 +
13488642-13488941,13489711-13489963,13490594-13490673,
13491251-13491393,13491512-13491610,13491785-13491974,
13492504-13492902,13492993-13493400
Length = 623
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/24 (45%), Positives = 14/24 (58%)
Frame = -3
Query: 487 DTGAGIFVEVETSGALHFGGITFD 416
+ G G+F + TSG H GG FD
Sbjct: 187 EVGDGVFEVLSTSGDTHLGGDDFD 210
>03_02_0511 +
9016215-9016425,9017292-9017365,9018399-9018609,
9019235-9019263,9019646-9020798,9021022-9021251
Length = 635
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 255 ILPSGKSTSVTSPSTLTAETGLSCNPPSQ-TASAH 356
+ P S+S+ SP++ T TGLS P Q +AH
Sbjct: 343 LYPESPSSSLISPASATPRTGLSSPIPEQEVPTAH 377
>02_05_0239 + 27101440-27101904
Length = 154
Score = 27.5 bits (58), Expect = 8.0
Identities = 11/29 (37%), Positives = 16/29 (55%)
Frame = +2
Query: 230 ICPDGLVFDPTIRKINKCDQPFNVDCGDR 316
IC DG+ +R + C + F+ DC DR
Sbjct: 93 ICLDGMEAGRAVRVLPGCSRAFHQDCVDR 121
>01_01_0025 + 188915-189132,190625-190705,191350-191506,191958-192161,
192248-192356,192401-192496,192724-193994,194200-194384,
194619-195055,197034-197077,197830-199036,199253-199479
Length = 1411
Score = 27.5 bits (58), Expect = 8.0
Identities = 14/35 (40%), Positives = 20/35 (57%), Gaps = 1/35 (2%)
Frame = +3
Query: 255 ILPSGKSTSVTSPSTLTAETGLSCNPPSQ-TASAH 356
+ P S+S+ SP++ T TGLS P Q +AH
Sbjct: 1119 LYPESPSSSLISPASATPRTGLSSPIPEQEVPTAH 1153
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 15,104,441
Number of Sequences: 37544
Number of extensions: 318775
Number of successful extensions: 1109
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 1088
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 1109
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1328870592
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
- SilkBase 1999-2023 -