Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D17
         (532 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces ...    32   0.061
SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9 |Schizos...    29   0.33 
SPAC926.04c |hsp90|swo1|heat shock protein Hsp90|Schizosaccharom...    26   4.0  
SPAC1039.07c |||4-aminobutyrate aminotransferase |Schizosaccharo...    25   7.0  
SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces p...    25   9.3  
SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3 |Schizosacc...    25   9.3  

>SPCC74.06 |mak3|phk2|histidine kinase Mak3 |Schizosaccharomyces
           pombe|chr 3|||Manual
          Length = 2344

 Score = 31.9 bits (69), Expect = 0.061
 Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 2/91 (2%)
 Frame = +3

Query: 3   TRHNPCKDSMHAQ-IQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAAS-EEREHAMK 176
           TR NP +       I  +++A +  +  G   +  V+ + G   LF+   S   REH +K
Sbjct: 273 TRKNPDERYTSCSGIVNDLEACLDDIDKGLILNDHVLEKTGRTSLFYLPCSIYGREHEIK 332

Query: 177 LIDYLLMRGELISDVSDLITVKNFEPVYFNS 269
           LI  +L       +  D   ++ F P Y N+
Sbjct: 333 LIRKILRNSPRAINHQDKKDLETFNPYYLNA 363


>SPBC32H8.10 |cdk9||cyclin-dependent protein kinase Cdk9
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 591

 Score = 29.5 bits (63), Expect = 0.33
 Identities = 13/34 (38%), Positives = 19/34 (55%)
 Frame = +3

Query: 429 DYHLVDYLSGEFLEEQYRGQRELAGKASTLRKLL 530
           DYHL++ L      E Y+ QR   GK   L+++L
Sbjct: 35  DYHLMEKLGEGTFGEVYKSQRRKDGKVYALKRIL 68


>SPAC926.04c |hsp90|swo1|heat shock protein
           Hsp90|Schizosaccharomyces pombe|chr 1|||Manual
          Length = 704

 Score = 25.8 bits (54), Expect = 4.0
 Identities = 16/49 (32%), Positives = 23/49 (46%)
 Frame = +3

Query: 45  QTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYL 191
           +T  DA  + L +G H   D  NRP  AKL    +    +  + L DY+
Sbjct: 410 KTFYDAFSKNLKLGIH--EDAANRPALAKLLRYNSLNSPDDLISLEDYI 456


>SPAC1039.07c |||4-aminobutyrate aminotransferase
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 448

 Score = 25.0 bits (52), Expect = 7.0
 Identities = 12/38 (31%), Positives = 23/38 (60%)
 Frame = +3

Query: 204 ELISDVSDLITVKNFEPVYFNSGADALEAALNMESFVT 317
           +L +++SDL+     + ++ ++G +A EAAL M    T
Sbjct: 96  QLATELSDLLPDGLDKTLFLSTGGEANEAALRMAKVYT 133


>SPAC56E4.04c |cut6||acetyl-CoA carboxylase|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 2280

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 8/14 (57%), Positives = 11/14 (78%)
 Frame = -2

Query: 516 GSRPCRRVHVGLCI 475
           G++PC+R H  LCI
Sbjct: 805 GNKPCQRYHALLCI 818


>SPBC691.03c |apl3||AP-2 adaptor complex subunit Alp3
           |Schizosaccharomyces pombe|chr 2|||Manual
          Length = 878

 Score = 24.6 bits (51), Expect = 9.3
 Identities = 12/30 (40%), Positives = 17/30 (56%)
 Frame = +3

Query: 225 DLITVKNFEPVYFNSGADALEAALNMESFV 314
           DLI  + FEP+    G D L  +L + +FV
Sbjct: 176 DLINPEWFEPIVMILGDDDLNVSLAVSNFV 205


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 2,112,971
Number of Sequences: 5004
Number of extensions: 39315
Number of successful extensions: 128
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 126
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 128
length of database: 2,362,478
effective HSP length: 68
effective length of database: 2,022,206
effective search space used: 218398248
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)