Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D17
(532 letters)
Database: rice
37,544 sequences; 14,793,348 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
12_01_0039 - 319871-319914,320021-320084,320198-320263,320397-32... 68 4e-12
11_01_0040 - 304439-304482,304589-304652,304766-304831,305509-30... 52 4e-07
01_06_0092 - 26377011-26377613,26379581-26380168 31 0.44
03_02_0143 - 5888005-5888088,5888818-5888949,5889485-5889634,589... 30 1.3
07_03_0603 - 19890664-19890823,19891104-19891329,19891498-198916... 29 2.3
01_05_0554 + 23221374-23222017,23222158-23222296 29 3.1
08_01_0108 - 791835-792398 28 4.1
06_03_1183 + 28237467-28237612,28238035-28238089,28238216-282383... 28 4.1
05_01_0372 - 2913518-2916562,2916674-2917528 28 4.1
08_02_0290 + 15383473-15383669,15385057-15385267,15386389-153864... 28 5.4
10_07_0061 + 12489552-12489674,12490761-12490836,12490916-124909... 27 7.1
03_05_0067 - 20460206-20460703,20461255-20461530 27 9.4
01_01_0195 + 1697447-1697691,1698150-1698808,1699754-1701570,170... 27 9.4
>12_01_0039 -
319871-319914,320021-320084,320198-320263,320397-320458,
321211-321298,321401-321461,321542-321625,322332-322630
Length = 255
Score = 68.1 bits (159), Expect = 4e-12
Identities = 48/170 (28%), Positives = 80/170 (47%)
Frame = +3
Query: 18 CKDSMHAQIQTEVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLM 197
C+ ++ QI E +AS Y ++ A+F RD + GFAK F +++ EER+HA KL+ Y M
Sbjct: 91 CEAAISEQINVEFNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLMKYQNM 150
Query: 198 RGELISDVSDLITVKNFEPVYFNSGADALEAALNMESFVTKSIRGVIDVCXXXXXXXXXX 377
RG + S + + F+ A+E AL +E V + + + V
Sbjct: 151 RGGRVRLQSIVTPLTEFDHPEKGDALYAMELALALEKLVNEKLHNLHSVAS--------- 201
Query: 378 XXXXXXXELKSRQVKFNDYHLVDYLSGEFLEEQYRGQRELAGKASTLRKL 527
+ ND L D++ EFLEEQ ++++ + LR++
Sbjct: 202 --------------RCNDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRV 237
>11_01_0040 -
304439-304482,304589-304652,304766-304831,305509-305640,
305744-305804,305885-306018,306310-306654
Length = 281
Score = 51.6 bits (118), Expect = 4e-07
Identities = 25/51 (49%), Positives = 34/51 (66%)
Frame = +3
Query: 51 EVDASVQYLAMGAHFSRDVINRPGFAKLFFDAASEEREHAMKLIDYLLMRG 203
E +AS Y ++ A+F RD + GFAK F +++ EER+HA KLI Y MRG
Sbjct: 134 EYNASYAYHSLFAYFDRDNVALKGFAKFFKESSDEERDHAEKLIKYQNMRG 184
Score = 29.5 bits (63), Expect = 1.8
Identities = 12/34 (35%), Positives = 21/34 (61%)
Frame = +3
Query: 426 NDYHLVDYLSGEFLEEQYRGQRELAGKASTLRKL 527
ND L D++ EFLEEQ ++++ + LR++
Sbjct: 230 NDPQLTDFVESEFLEEQVEAIKKISEYVAQLRRV 263
>01_06_0092 - 26377011-26377613,26379581-26380168
Length = 396
Score = 31.5 bits (68), Expect = 0.44
Identities = 21/83 (25%), Positives = 37/83 (44%)
Frame = -3
Query: 410 GFKFLGLRIFVVVFLGFGIPVAYVNDASDALCYERFHVQSSLQSIGPAIEVYRFEVFDGD 231
G LG R VV + G P+ ++ND L + + +S P + ++
Sbjct: 123 GVAALGRRDVVVAWRGTVRPMEWLNDLDFTLVSAAGVLGAGGRSPAPRVHRGWLSIYTAS 182
Query: 230 KIADVRNKLSPHEQVVDQLHRML 162
A +KLS EQ+ D++ R++
Sbjct: 183 DPASKYSKLSAREQISDEIKRLM 205
>03_02_0143 -
5888005-5888088,5888818-5888949,5889485-5889634,
5890540-5890710,5890840-5891007,5891139-5891234,
5891777-5891839,5891949-5892114,5892207-5892274,
5892646-5892789,5893111-5893176,5893329-5893520,
5894567-5894657,5895241-5895329,5895521-5895583,
5895698-5895823,5895902-5895991,5896059-5896181,
5896503-5896619,5896704-5896904,5897643-5897723,
5897897-5897977,5898083-5898184,5898264-5898488,
5898571-5898726,5898798-5899010,5899306-5899455,
5900082-5900204,5900299-5900364,5900555-5900620,
5900686-5900817,5900891-5900965,5901355-5901438,
5901516-5901668,5901741-5901806,5902044-5902205,
5902272-5902388,5902495-5902566,5902702-5902761,
5902869-5902985,5904131-5904430,5904518-5904622,
5905710-5905775,5905853-5906297,5906399-5906567,
5906684-5906736,5906819-5906925
Length = 1981
Score = 29.9 bits (64), Expect = 1.3
Identities = 16/70 (22%), Positives = 37/70 (52%), Gaps = 2/70 (2%)
Frame = -1
Query: 244 FLTVIRSLTSEISSPLMSK*S-ISFIACSLSS-LAASKNSFANPGRLITSREKWAPIARY 71
++ +++L +E++S + S ++ + L+ + +KN ++T+ EKW I R
Sbjct: 493 YVAPMKALAAEVTSTFSRRLSPLNLVVRELTGDMQLTKNEIEETQMIVTTPEKWDVITRK 552
Query: 70 CTDASTSVCI 41
+D S S+ +
Sbjct: 553 SSDMSLSMLV 562
>07_03_0603 -
19890664-19890823,19891104-19891329,19891498-19891636,
19891849-19891942,19892291-19892311,19892506-19892941,
19893133-19893280,19893369-19893476,19893543-19893659,
19893960-19894016,19894488-19894553,19895140-19895328,
19895410-19895523,19895684-19895766,19895857-19896322,
19896832-19897476
Length = 1022
Score = 29.1 bits (62), Expect = 2.3
Identities = 12/29 (41%), Positives = 18/29 (62%)
Frame = -3
Query: 167 MLPLFASRVEEQLRESWTIDHVTGEMGTH 81
M P A+ + + LRE ++D VT MG+H
Sbjct: 169 MTPAMAASLRDSLREVCSLDDVTERMGSH 197
>01_05_0554 + 23221374-23222017,23222158-23222296
Length = 260
Score = 28.7 bits (61), Expect = 3.1
Identities = 19/64 (29%), Positives = 31/64 (48%), Gaps = 1/64 (1%)
Frame = -1
Query: 307 DSMFRAASKASAPLLKYTGSKF-LTVIRSLTSEISSPLMSK*SISFIACSLSSLAASKNS 131
D +F A +P + G + L ++ SLT + S+PL S+ + ++ SKNS
Sbjct: 51 DLIFFPGLGAKSPRSSFLGDRVGLGLVDSLTDDSSTPLGSRKVLLGSEMRITDNVTSKNS 110
Query: 130 FANP 119
F P
Sbjct: 111 FTAP 114
>08_01_0108 - 791835-792398
Length = 187
Score = 28.3 bits (60), Expect = 4.1
Identities = 24/65 (36%), Positives = 33/65 (50%), Gaps = 4/65 (6%)
Frame = +2
Query: 137 LRRG*RREGACDEADRLLAHEGRAYF*RQRSYHRQKLRTCILQ*RGR--C--FGGCSEHG 304
LRR RR GA A+ ++A + R + R+RS RQ+ R + R R C GGC G
Sbjct: 88 LRRPRRRGGARGRAEVVVAGKRRRSWRRRRSRTRQRRRRSRRRRRRRRTCGGGGGCGRGG 147
Query: 305 IVRNK 319
R +
Sbjct: 148 DARGR 152
>06_03_1183 +
28237467-28237612,28238035-28238089,28238216-28238354,
28238433-28238487,28238578-28238646,28239338-28239560,
28239645-28239740,28240708-28240827,28240937-28241062,
28241369-28241524,28242706-28242828,28242913-28242980,
28243119-28243254,28243365-28243530,28243615-28243853
Length = 638
Score = 28.3 bits (60), Expect = 4.1
Identities = 13/40 (32%), Positives = 23/40 (57%), Gaps = 1/40 (2%)
Frame = +3
Query: 21 KDSMHAQIQTEVDASVQYLAMGA-HFSRDVINRPGFAKLF 137
++ M A++Q + YL A FS +V+N+PGF ++
Sbjct: 131 RNCMSARLQLTISKRSHYLVTFACWFSENVMNKPGFVDIY 170
>05_01_0372 - 2913518-2916562,2916674-2917528
Length = 1299
Score = 28.3 bits (60), Expect = 4.1
Identities = 21/75 (28%), Positives = 33/75 (44%), Gaps = 2/75 (2%)
Frame = -3
Query: 299 VQSSLQSIGPAIEVYRFEVFDGDKIADVRNKLSPHEQVVDQLHRML-PLFA-SRVEEQLR 126
V S + A+E+ E + +K + + P V D M+ P+ A S VEE
Sbjct: 250 VVSEANGVAAAVELAVEEKLEDNKGEEEEMEAKPEPVVDDTSSEMIAPVSAESAVEESTE 309
Query: 125 ESWTIDHVTGEMGTH 81
+ T+D + EM H
Sbjct: 310 KEQTVDDTSSEMIAH 324
>08_02_0290 +
15383473-15383669,15385057-15385267,15386389-15386440,
15386545-15386863,15387022-15387121,15387391-15387657,
15387780-15387857,15387943-15388032,15388119-15388168,
15388267-15388366,15388777-15388875,15389023-15389136,
15389238-15389412,15389726-15390132,15390565-15390639,
15391412-15391438
Length = 786
Score = 27.9 bits (59), Expect = 5.4
Identities = 16/44 (36%), Positives = 20/44 (45%)
Frame = -3
Query: 248 EVFDGDKIADVRNKLSPHEQVVDQLHRMLPLFASRVEEQLRESW 117
E F D+I+ V +L E VD+L P E L ESW
Sbjct: 695 ETFSVDRISPVIERLQRLEGKVDELGNKPPEIPLEKERSLLESW 738
>10_07_0061 +
12489552-12489674,12490761-12490836,12490916-12490980,
12491089-12491166,12492156-12492236,12492813-12492974,
12493328-12493426,12493509-12494797,12495063-12495286,
12495373-12495500,12495596-12495634,12495724-12497178
Length = 1272
Score = 27.5 bits (58), Expect = 7.1
Identities = 18/76 (23%), Positives = 31/76 (40%), Gaps = 1/76 (1%)
Frame = -3
Query: 248 EVFDG-DKIADVRNKLSPHEQVVDQLHRMLPLFASRVEEQLRESWTIDHVTGEMGTHCQI 72
E DG DK D ++P V+DQ P + + + + W +GE +
Sbjct: 451 EQMDGMDKSKDTLQAMAPENSVLDQQQPQAPHLSQQAGPRNMQQWQNPRFSGEKDLKKEE 510
Query: 71 LYGRVHLSLYLRVHAV 24
+ R ++ RV +V
Sbjct: 511 MLQRRKIAATSRVSSV 526
>03_05_0067 - 20460206-20460703,20461255-20461530
Length = 257
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/26 (46%), Positives = 16/26 (61%)
Frame = +3
Query: 183 DYLLMRGELISDVSDLITVKNFEPVY 260
DY + G+L SDV+DLI F+ Y
Sbjct: 159 DYTIFVGDLASDVTDLILQDTFKAHY 184
>01_01_0195 +
1697447-1697691,1698150-1698808,1699754-1701570,
1701700-1701771
Length = 930
Score = 27.1 bits (57), Expect = 9.4
Identities = 12/29 (41%), Positives = 15/29 (51%)
Frame = +1
Query: 19 VKTACTRKYKLRWTRPYNIWQWVPISPVT 105
++ T K RW PYN+ Q P PVT
Sbjct: 89 IRVQITDADKPRWEVPYNLLQREPAPPVT 117
Database: rice
Posted date: Oct 4, 2007 10:57 AM
Number of letters in database: 14,793,348
Number of sequences in database: 37,544
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 14,737,526
Number of Sequences: 37544
Number of extensions: 290665
Number of successful extensions: 810
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 798
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 810
length of database: 14,793,348
effective HSP length: 77
effective length of database: 11,902,460
effective search space used: 1178343540
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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