Samia BLAST Result against rice

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D16
         (544 letters)

Database: rice 
           37,544 sequences; 14,793,348 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161     59   2e-09
01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129           52   2e-07
02_04_0074 - 19474786-19474812,19475174-19475400,19476362-194764...    51   7e-07
07_01_1001 - 8460467-8460799                                           43   1e-04
07_03_0321 + 16757414-16757743                                         42   2e-04
01_06_0098 - 26416768-26416998                                         31   0.45 
07_03_0809 - 21669632-21669637,21669871-21670131,21670573-216707...    27   7.3  
12_01_0731 - 6516894-6517473,6517485-6519574                           27   9.7  
08_02_0909 - 22515326-22515418,22515992-22516150,22516583-225166...    27   9.7  

>05_05_0028 + 21691137-21691224,21691539-21691765,21692135-21692161
          Length = 113

 Score = 59.3 bits (137), Expect = 2e-09
 Identities = 26/52 (50%), Positives = 40/52 (76%)
 Frame = -1

Query: 463 GKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 308
           G  SP+A D++ IL SVG+EA+ E+L+ ++SEL GK++ E+I AGR K +S+
Sbjct: 14  GNTSPSADDIKNILESVGVEANDERLEFLLSELEGKDITEVIAAGREKFASV 65


>01_01_0642 + 4852218-4852305,4852655-4852884,4853103-4853129
          Length = 114

 Score = 52.4 bits (120), Expect = 2e-07
 Identities = 23/52 (44%), Positives = 37/52 (71%)
 Frame = -1

Query: 463 GKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSSM 308
           G +SP A D+  IL SVG E D+ K++ ++S+++GK++ ELI  GR K +S+
Sbjct: 14  GNSSPTAEDLTTILESVGCEIDNAKMELLLSQVSGKDITELIACGREKFASV 65


>02_04_0074 -
           19474786-19474812,19475174-19475400,19476362-19476496,
           19478662-19479193
          Length = 306

 Score = 50.8 bits (116), Expect = 7e-07
 Identities = 24/66 (36%), Positives = 40/66 (60%)
 Frame = -1

Query: 505 KMRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGR 326
           +M+          AG  +P+A D+  IL SVG E D  K++ ++S+L GK++ E+I +GR
Sbjct: 193 RMKFISAYLLATLAGNPNPSAEDLTTILESVGAEVDHGKMELLLSQLAGKDITEIIASGR 252

Query: 325 GKLSSM 308
            K +S+
Sbjct: 253 EKFASV 258


>07_01_1001 - 8460467-8460799
          Length = 110

 Score = 43.2 bits (97), Expect = 1e-04
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = -1

Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
           MR           G ASP   DV  IL +VG + D +KL  +  ++ GK++ E++ AG  
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADVDEDKLGYLFDQVAGKDLSEILAAGSE 60

Query: 322 KLS 314
            L+
Sbjct: 61  MLA 63


>07_03_0321 + 16757414-16757743
          Length = 109

 Score = 42.3 bits (95), Expect = 2e-04
 Identities = 21/63 (33%), Positives = 32/63 (50%)
 Frame = -1

Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
           MR           G ASP   DV  IL +VG + D +KL  +  ++ GK++ E++ AG  
Sbjct: 1   MRFVAAYLMATIGGNASPTKDDVRAILGAVGADIDEDKLGYLFDQVAGKDLAEILAAGSE 60

Query: 322 KLS 314
            L+
Sbjct: 61  MLA 63


>01_06_0098 - 26416768-26416998
          Length = 76

 Score = 31.5 bits (68), Expect = 0.45
 Identities = 14/33 (42%), Positives = 20/33 (60%)
 Frame = -1

Query: 451 PAAADVEKILSSVGIEADSEKLKKVISELNGKN 353
           P    V KI+ +V IEADS + K ++  L GK+
Sbjct: 16  PPPPAVVKIIETVHIEADSAEFKSIVQRLTGKD 48


>07_03_0809 -
           21669632-21669637,21669871-21670131,21670573-21670752,
           21671458-21672819
          Length = 602

 Score = 27.5 bits (58), Expect = 7.3
 Identities = 14/36 (38%), Positives = 20/36 (55%)
 Frame = -1

Query: 454 SPAAADVEKILSSVGIEADSEKLKKVISELNGKNVE 347
           SPA  D+   L+  G E DS   + ++S+LNG   E
Sbjct: 50  SPATQDLLSKLNGSGGEGDSPATQDLLSKLNGSGGE 85


>12_01_0731 - 6516894-6517473,6517485-6519574
          Length = 889

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 10/22 (45%), Positives = 15/22 (68%)
 Frame = -2

Query: 474 PCWPAKRPQLLLMSKRSSALWG 409
           PCW +K PQLL++  +S+   G
Sbjct: 714 PCWMSKLPQLLVLVLKSNRFSG 735


>08_02_0909 -
           22515326-22515418,22515992-22516150,22516583-22516658,
           22517980-22518141,22518826-22519259,22519723-22521414
          Length = 871

 Score = 27.1 bits (57), Expect = 9.7
 Identities = 14/40 (35%), Positives = 25/40 (62%)
 Frame = -1

Query: 430 KILSSVGIEADSEKLKKVISELNGKNVEELIEAGRGKLSS 311
           ++LS  GI++ S K    +  ++G N++EL  AG  +L+S
Sbjct: 674 EVLSMSGIQSVSNKFVNELIPVHGSNLKELAFAGCLQLTS 713


  Database: rice
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 14,793,348
  Number of sequences in database:  37,544
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 10,948,039
Number of Sequences: 37544
Number of extensions: 172648
Number of successful extensions: 477
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 470
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 477
length of database: 14,793,348
effective HSP length: 78
effective length of database: 11,864,916
effective search space used: 1210221432
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)