Last updated: 2022/11/18
BLASTX 2.2.12 [Aug-07-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= S06A01NCLL0008_D16
(544 letters)
Database: human
237,096 sequences; 76,859,062 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic ri... 75 2e-13
CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein. 75 2e-13
CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein. 75 2e-13
BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, larg... 75 2e-13
BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, larg... 75 2e-13
BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, larg... 75 2e-13
BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, larg... 75 2e-13
AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2 pr... 75 2e-13
S75989-1|AAB33570.1| 632|Homo sapiens gamma-aminobutyric acid t... 30 6.0
>M17887-1|AAA36472.1| 115|Homo sapiens protein ( Human acidic
ribosomal phosphoprotein P2 mRNA, complete cds. ).
Length = 115
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = -1
Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
MR G +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I G G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 322 KLSSM 308
KL+S+
Sbjct: 61 KLASV 65
>CR542248-1|CAG47044.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = -1
Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
MR G +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I G G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 322 KLSSM 308
KL+S+
Sbjct: 61 KLASV 65
>CR542212-1|CAG47008.1| 115|Homo sapiens RPLP2 protein.
Length = 115
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = -1
Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
MR G +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I G G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 322 KLSSM 308
KL+S+
Sbjct: 61 KLASV 65
>BC062314-1|AAH62314.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = -1
Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
MR G +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I G G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 322 KLSSM 308
KL+S+
Sbjct: 61 KLASV 65
>BC007573-1|AAH07573.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = -1
Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
MR G +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I G G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 322 KLSSM 308
KL+S+
Sbjct: 61 KLASV 65
>BC005920-1|AAH05920.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = -1
Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
MR G +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I G G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 322 KLSSM 308
KL+S+
Sbjct: 61 KLASV 65
>BC005354-1|AAH05354.1| 115|Homo sapiens ribosomal protein, large,
P2 protein.
Length = 115
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = -1
Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
MR G +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I G G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 322 KLSSM 308
KL+S+
Sbjct: 61 KLASV 65
>AB061837-1|BAB79475.1| 115|Homo sapiens ribosomal protein P2
protein.
Length = 115
Score = 74.5 bits (175), Expect = 2e-13
Identities = 35/65 (53%), Positives = 46/65 (70%)
Frame = -1
Query: 502 MRXXXXXXXXXXAGKASPAAADVEKILSSVGIEADSEKLKKVISELNGKNVEELIEAGRG 323
MR G +SP+A D++KIL SVGIEAD ++L KVISELNGKN+E++I G G
Sbjct: 1 MRYVASYLLAALGGNSSPSAKDIKKILDSVGIEADDDRLNKVISELNGKNIEDVIAQGIG 60
Query: 322 KLSSM 308
KL+S+
Sbjct: 61 KLASV 65
>S75989-1|AAB33570.1| 632|Homo sapiens gamma-aminobutyric acid
transporter type 3 protein.
Length = 632
Score = 29.9 bits (64), Expect = 6.0
Identities = 15/50 (30%), Positives = 22/50 (44%)
Frame = +2
Query: 32 FFFFFLNIPPIYFIETYSPSCYSYNINWNKTTSAASTPTLFIMKLVKKTE 181
F FF + P+ + Y+ + Y I W S+ L+I V KTE
Sbjct: 528 FIFFLIKYKPLKYNNIYTYPAWGYGIGWLMALSSMLCIPLWICITVWKTE 577
Database: human
Posted date: Oct 23, 2007 1:18 PM
Number of letters in database: 76,859,062
Number of sequences in database: 237,096
Lambda K H
0.318 0.134 0.401
Gapped
Lambda K H
0.279 0.0580 0.190
Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 57,460,414
Number of Sequences: 237096
Number of extensions: 928577
Number of successful extensions: 5655
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 5630
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 5655
length of database: 76,859,062
effective HSP length: 86
effective length of database: 56,468,806
effective search space used: 5308067764
frameshift window, decay const: 40, 0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)
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