Samia BLAST Result against spombe

BLASTX 2.2.12 [Aug-07-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= S06A01NCLL0008_D14
         (371 letters)

Database: spombe 
           5004 sequences; 2,362,478 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr 1...    26   1.6  
SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr...    26   1.6  
SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces...    25   5.0  
SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces pombe...    24   6.7  
SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces pomb...    24   6.7  
SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit |...    24   6.7  

>SPAC12B10.05 |||metallopeptidase|Schizosaccharomyces pombe|chr
           1|||Manual
          Length = 486

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 12/34 (35%), Positives = 18/34 (52%)
 Frame = +3

Query: 171 DAHMLV*SLNPQFSLWFHHTTGGTVGQRTFIIEH 272
           D  + + S NP    W    TG T+G++ F IE+
Sbjct: 133 DCSLYLPSKNPYIEKWEGLRTGSTLGKKLFQIEN 166


>SPCC613.02 |||membrane transporter|Schizosaccharomyces pombe|chr
           3|||Manual
          Length = 497

 Score = 26.2 bits (55), Expect = 1.6
 Identities = 15/56 (26%), Positives = 25/56 (44%)
 Frame = +2

Query: 80  SYYNLNIKKKQFPMFTSVGIHMAA*FFFHN*CSYACVIIEPTIFLMVSSHNWRDGR 247
           SY+N+   +   P++     H  A F   N  S + ++I P +FL      W + R
Sbjct: 321 SYFNIAGYQASVPIYAKELYHYNA-FQSGNFLSLSALVIAPLVFLSTFLSKWAEDR 375


>SPAC26F1.12c |||conserved eukaryotic protein|Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 356

 Score = 24.6 bits (51), Expect = 5.0
 Identities = 7/10 (70%), Positives = 10/10 (100%)
 Frame = +3

Query: 198 NPQFSLWFHH 227
           +PQFS+WFH+
Sbjct: 34  HPQFSIWFHN 43


>SPAC1F5.06 |||heat shock protein Lhs1 |Schizosaccharomyces
           pombe|chr 1|||Manual
          Length = 848

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 14/42 (33%), Positives = 24/42 (57%)
 Frame = +1

Query: 214 YGFITQLAGRSASVLSL*NMVAHSSRSARVDAMSSIETLLWR 339
           YG ++  A R AS      +    S++A  +A++ +ETLL+R
Sbjct: 567 YGEMSDNALRLASAKLERRLQIDKSKAAHDNALNELETLLYR 608


>SPBC30D10.05c |||sepiapterin reductase |Schizosaccharomyces
           pombe|chr 2|||Manual
          Length = 247

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 13/39 (33%), Positives = 20/39 (51%)
 Frame = -2

Query: 166 VKKKLCSHVDADRSEHRKLFFFNVQIII*VTKFPRPILQ 50
           V + +    DAD +E RKLF  N   ++   K+  P L+
Sbjct: 88  VLEPIAKIADADINEWRKLFDINFFSVVETVKYAIPHLR 126


>SPAC22E12.19 ||SPAC2E12.01|histone deacetylase complex subunit
           |Schizosaccharomyces pombe|chr 1|||Manual
          Length = 661

 Score = 24.2 bits (50), Expect = 6.7
 Identities = 11/21 (52%), Positives = 14/21 (66%)
 Frame = +2

Query: 77  YSYYNLNIKKKQFPMFTSVGI 139
           YS+YNLN +K Q    T VG+
Sbjct: 92  YSFYNLNREKFQRDKQTIVGV 112


  Database: spombe
    Posted date:  Oct 4, 2007 10:57 AM
  Number of letters in database: 2,362,478
  Number of sequences in database:  5004
  
Lambda     K      H
   0.318    0.134    0.401 

Gapped
Lambda     K      H
   0.279   0.0580    0.190 


Matrix: BLOSUM62
Gap Penalties: Existence: 9, Extension: 2
Number of Hits to DB: 1,635,180
Number of Sequences: 5004
Number of extensions: 32284
Number of successful extensions: 57
Number of sequences better than 10.0: 6
Number of HSP's better than 10.0 without gapping: 56
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 0
Number of HSP's gapped (non-prelim): 57
length of database: 2,362,478
effective HSP length: 65
effective length of database: 2,037,218
effective search space used: 118158644
frameshift window, decay const: 40,  0.1
T: 12
A: 40
X1: 16 ( 7.3 bits)
X2: 37 (14.9 bits)
X3: 62 (25.0 bits)
S1: 41 (21.7 bits)